Variant report

Variant	rs60196542
Chromosome Location	chr12:21412727-21412728
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs11045839	1.00[AMR][1000 genomes]
rs11045840	1.00[AMR][1000 genomes]
rs11045841	1.00[AMR][1000 genomes]
rs11045844	1.00[AMR][1000 genomes]
rs11045845	1.00[AMR][1000 genomes]
rs11045846	1.00[AMR][1000 genomes]
rs11045847	1.00[AMR][1000 genomes]
rs11045848	1.00[AMR][1000 genomes]
rs11045849	1.00[AMR][1000 genomes]
rs11045852	1.00[AMR][1000 genomes]
rs11045854	1.00[AMR][1000 genomes]
rs11045855	1.00[AMR][1000 genomes]
rs11045857	1.00[AMR][1000 genomes]
rs12296695	1.00[AMR][1000 genomes]
rs12297423	1.00[AMR][1000 genomes]
rs12301796	1.00[AMR][1000 genomes]
rs12302130	1.00[AMR][1000 genomes]
rs12302293	1.00[AMR][1000 genomes]
rs12303713	1.00[AMR][1000 genomes]
rs12305852	1.00[AMR][1000 genomes]
rs12306105	1.00[AMR][1000 genomes]
rs12307624	1.00[AMR][1000 genomes]
rs12310216	1.00[AMR][1000 genomes]
rs12310977	1.00[AMR][1000 genomes]
rs12312746	1.00[AMR][1000 genomes]
rs12313499	1.00[AMR][1000 genomes]
rs12314902	1.00[AMR][1000 genomes]
rs12315464	1.00[AMR][1000 genomes]
rs12315627	1.00[AMR][1000 genomes]
rs12318652	1.00[AMR][1000 genomes]
rs2199765	1.00[AMR][1000 genomes]
rs28588986	1.00[AMR][1000 genomes]
rs28673691	1.00[AMR][1000 genomes]
rs28782899	1.00[AMR][1000 genomes]
rs28854565	1.00[AMR][1000 genomes]
rs3919879	1.00[AMR][1000 genomes]
rs55924330	1.00[AMR][1000 genomes]
rs55941487	1.00[AMR][1000 genomes]
rs56388154	1.00[AMR][1000 genomes]
rs56397921	1.00[AMR][1000 genomes]
rs57067716	1.00[AMR][1000 genomes]
rs57702815	1.00[AMR][1000 genomes]
rs57986280	1.00[AMR][1000 genomes]
rs58103058	1.00[AMR][1000 genomes]
rs58173663	1.00[AMR][1000 genomes]
rs58265175	1.00[AMR][1000 genomes]
rs58686364	1.00[AMR][1000 genomes]
rs58961766	1.00[AMR][1000 genomes]
rs59085891	1.00[AMR][1000 genomes]
rs59194406	1.00[AMR][1000 genomes]
rs59459177	1.00[AMR][1000 genomes]
rs61264547	1.00[AMR][1000 genomes]
rs61560728	1.00[AMR][1000 genomes]
rs61564937	1.00[AMR][1000 genomes]
rs6487211	1.00[AMR][1000 genomes]
rs7301251	1.00[AMR][1000 genomes]
rs74064185	1.00[AMR][1000 genomes]
rs74064186	1.00[AMR][1000 genomes]
rs74064193	1.00[AMR][1000 genomes]
rs74064195	1.00[AMR][1000 genomes]
rs74064196	1.00[AMR][1000 genomes]
rs74064211	1.00[AMR][1000 genomes]
rs74064213	1.00[AMR][1000 genomes]
rs74064215	1.00[AMR][1000 genomes]
rs74064260	1.00[AMR][1000 genomes]
rs74064264	1.00[AMR][1000 genomes]
rs74064273	1.00[AMR][1000 genomes]
rs74066310	1.00[AMR][1000 genomes]
rs74066311	1.00[AMR][1000 genomes]
rs74066323	1.00[AMR][1000 genomes]
rs74066324	1.00[AMR][1000 genomes]
rs74068928	1.00[AMR][1000 genomes]
rs7486079	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898872	chr12:21000586-21413632	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv948700	chr12:21008498-21422492	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv515735	chr12:21010048-21420712	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1052587	chr12:21149131-21420712	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1050396	chr12:21152478-21420712	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv898883	chr12:21294293-21450917	Enhancers Active TSS Genic enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv898885	chr12:21352541-21416413	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv898886	chr12:21354494-21450250	Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv898887	chr12:21355537-21416413	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv898888	chr12:21355537-21426087	Strong transcription Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv3390939	chr12:21393734-21418537	Enhancers Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:21411000-21460400	Weak transcription	Brain Cingulate Gyrus	brain
2	chr12:21412200-21413000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr12:21412600-21414800	Weak transcription	Liver	Liver

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