Variant report

Variant	rs28673691
Chromosome Location	chr12:21346828-21346829
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 105 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs11045839	1.00[AMR][1000 genomes]
rs11045840	1.00[AMR][1000 genomes]
rs11045841	1.00[AMR][1000 genomes]
rs11045844	1.00[AMR][1000 genomes]
rs11045845	1.00[AMR][1000 genomes]
rs11045846	1.00[AMR][1000 genomes]
rs11045847	1.00[AMR][1000 genomes]
rs11045848	1.00[AMR][1000 genomes]
rs11045849	1.00[AMR][1000 genomes]
rs11045852	1.00[AMR][1000 genomes]
rs11045854	1.00[AMR][1000 genomes]
rs11045855	1.00[AMR][1000 genomes]
rs11045857	1.00[AMR][1000 genomes]
rs12296695	1.00[AMR][1000 genomes]
rs12297423	1.00[AMR][1000 genomes]
rs12301796	1.00[AMR][1000 genomes]
rs12302130	1.00[AMR][1000 genomes]
rs12302293	1.00[AMR][1000 genomes]
rs12303713	1.00[AMR][1000 genomes]
rs12305852	1.00[AMR][1000 genomes]
rs12306105	1.00[AMR][1000 genomes]
rs12307624	1.00[AMR][1000 genomes]
rs12310216	1.00[AMR][1000 genomes]
rs12310977	1.00[AMR][1000 genomes]
rs12312746	1.00[AMR][1000 genomes]
rs12313499	1.00[AMR][1000 genomes]
rs12314902	1.00[AMR][1000 genomes]
rs12315464	1.00[AMR][1000 genomes]
rs12315627	1.00[AMR][1000 genomes]
rs12318652	1.00[AMR][1000 genomes]
rs2199765	1.00[AMR][1000 genomes]
rs28588986	1.00[AMR][1000 genomes]
rs28782899	1.00[AMR][1000 genomes]
rs28854565	1.00[AMR][1000 genomes]
rs3919879	1.00[AMR][1000 genomes]
rs55924330	1.00[AMR][1000 genomes]
rs55941487	1.00[AMR][1000 genomes]
rs56388154	1.00[AMR][1000 genomes]
rs56397921	1.00[AMR][1000 genomes]
rs57067716	1.00[AMR][1000 genomes]
rs57702815	1.00[AMR][1000 genomes]
rs57986280	1.00[AMR][1000 genomes]
rs58103058	1.00[AMR][1000 genomes]
rs58173663	1.00[AMR][1000 genomes]
rs58265175	1.00[AMR][1000 genomes]
rs58686364	1.00[AMR][1000 genomes]
rs58961766	1.00[AMR][1000 genomes]
rs59085891	1.00[AMR][1000 genomes]
rs59194406	1.00[AMR][1000 genomes]
rs59459177	1.00[AMR][1000 genomes]
rs60196542	1.00[AMR][1000 genomes]
rs61264547	1.00[AMR][1000 genomes]
rs61560728	1.00[AMR][1000 genomes]
rs61564937	1.00[AMR][1000 genomes]
rs6487211	1.00[AMR][1000 genomes]
rs7301251	1.00[AMR][1000 genomes]
rs74064185	1.00[AMR][1000 genomes]
rs74064186	1.00[AMR][1000 genomes]
rs74064193	1.00[AMR][1000 genomes]
rs74064195	1.00[AMR][1000 genomes]
rs74064196	1.00[AMR][1000 genomes]
rs74064211	1.00[AMR][1000 genomes]
rs74064213	1.00[AMR][1000 genomes]
rs74064215	1.00[AMR][1000 genomes]
rs74064260	1.00[AMR][1000 genomes]
rs74064264	1.00[AMR][1000 genomes]
rs74064273	1.00[AMR][1000 genomes]
rs74066310	1.00[AMR][1000 genomes]
rs74066311	1.00[AMR][1000 genomes]
rs74066323	1.00[AMR][1000 genomes]
rs74066324	1.00[AMR][1000 genomes]
rs74068928	1.00[AMR][1000 genomes]
rs7486079	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:32 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898872	chr12:21000586-21413632	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1045460	chr12:21007732-21348247	Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1048648	chr12:21007732-21410089	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv949142	chr12:21008498-21382619	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv948700	chr12:21008498-21422492	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv531958	chr12:21008499-21377322	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1047113	chr12:21008519-21402544	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv541411	chr12:21008519-21402544	ZNF genes & repeats Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv515735	chr12:21010048-21420712	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv933139	chr12:21011077-21404166	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv557710	chr12:21011480-21404832	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
12	nsv1038517	chr12:21017375-21356781	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
13	nsv541412	chr12:21017375-21356781	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
14	nsv1052893	chr12:21017376-21356782	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
15	nsv541413	chr12:21017376-21356782	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
16	nsv1051005	chr12:21017575-21356642	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
17	nsv541414	chr12:21017575-21356642	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
18	nsv933316	chr12:21017576-21404166	ZNF genes & repeats Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
19	nsv916519	chr12:21017673-21356568	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
20	nsv469159	chr12:21124371-21404832	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
21	nsv557717	chr12:21124371-21404832	Enhancers Strong transcription ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
22	nsv1052587	chr12:21149131-21420712	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
23	nsv1050396	chr12:21152478-21420712	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
24	nsv1054132	chr12:21165101-21402544	Enhancers Strong transcription Genic enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
25	nsv541415	chr12:21165101-21402544	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
26	nsv933284	chr12:21171894-21404166	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
27	esv3439156	chr12:21207396-21370189	Genic enhancers Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
28	nsv1041711	chr12:21236384-21402544	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
29	nsv898883	chr12:21294293-21450917	Enhancers Active TSS Genic enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
30	esv1795634	chr12:21330988-21393018	ZNF genes & repeats Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
31	nsv557728	chr12:21341096-21382342	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
32	nsv1045025	chr12:21341096-21384397	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:21345800-21361800	Strong transcription	Liver	Liver

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