Variant report

Variant	rs74064273
Chromosome Location	chr12:21402026-21402027
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 104 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs11045839	1.00[AMR][1000 genomes]
rs11045840	1.00[AMR][1000 genomes]
rs11045841	1.00[AMR][1000 genomes]
rs11045844	1.00[AMR][1000 genomes]
rs11045845	1.00[AMR][1000 genomes]
rs11045846	1.00[AMR][1000 genomes]
rs11045847	1.00[AMR][1000 genomes]
rs11045848	1.00[AMR][1000 genomes]
rs11045849	1.00[AMR][1000 genomes]
rs11045852	1.00[AMR][1000 genomes]
rs11045854	1.00[AMR][1000 genomes]
rs11045855	1.00[AMR][1000 genomes]
rs11045857	1.00[AMR][1000 genomes]
rs11045892	0.81[AFR][1000 genomes]
rs11045893	0.81[AFR][1000 genomes]
rs12296695	1.00[AMR][1000 genomes]
rs12297423	1.00[AMR][1000 genomes]
rs12301796	1.00[AMR][1000 genomes]
rs12302130	1.00[AMR][1000 genomes]
rs12302293	1.00[AMR][1000 genomes]
rs12303713	1.00[AMR][1000 genomes]
rs12305852	1.00[AMR][1000 genomes]
rs12306105	1.00[AMR][1000 genomes]
rs12307624	1.00[AMR][1000 genomes]
rs12310216	1.00[AMR][1000 genomes]
rs12310977	1.00[AMR][1000 genomes]
rs12312746	1.00[AMR][1000 genomes]
rs12313499	1.00[AMR][1000 genomes]
rs12314902	1.00[AMR][1000 genomes]
rs12315464	1.00[AMR][1000 genomes]
rs12315627	1.00[AMR][1000 genomes]
rs12318652	1.00[AMR][1000 genomes]
rs12370842	0.81[AFR][1000 genomes]
rs12815795	0.81[AFR][1000 genomes]
rs2199765	1.00[AMR][1000 genomes]
rs28588986	1.00[AMR][1000 genomes]
rs28673691	1.00[AMR][1000 genomes]
rs28782899	1.00[AMR][1000 genomes]
rs28854565	1.00[AMR][1000 genomes]
rs34111581	0.81[AFR][1000 genomes]
rs3919879	1.00[AMR][1000 genomes]
rs55924330	1.00[AMR][1000 genomes]
rs55941487	1.00[AMR][1000 genomes]
rs56164184	0.81[AFR][1000 genomes]
rs56388154	1.00[AMR][1000 genomes]
rs56397921	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57067716	1.00[AMR][1000 genomes]
rs57702815	1.00[AMR][1000 genomes]
rs57986280	1.00[AMR][1000 genomes]
rs58103058	1.00[AMR][1000 genomes]
rs58173663	1.00[AMR][1000 genomes]
rs58265175	1.00[AMR][1000 genomes]
rs58686364	1.00[AMR][1000 genomes]
rs58961766	1.00[AMR][1000 genomes]
rs59085891	1.00[AMR][1000 genomes]
rs59194406	1.00[AMR][1000 genomes]
rs59459177	1.00[AMR][1000 genomes]
rs60196542	1.00[AMR][1000 genomes]
rs61264547	1.00[AMR][1000 genomes]
rs61560728	1.00[AMR][1000 genomes]
rs61564937	1.00[AMR][1000 genomes]
rs6487211	1.00[AMR][1000 genomes]
rs7301251	1.00[AMR][1000 genomes]
rs74064185	1.00[AMR][1000 genomes]
rs74064186	1.00[AMR][1000 genomes]
rs74064193	1.00[AMR][1000 genomes]
rs74064195	1.00[AMR][1000 genomes]
rs74064196	1.00[AMR][1000 genomes]
rs74064211	1.00[AMR][1000 genomes]
rs74064213	1.00[AMR][1000 genomes]
rs74064215	1.00[AMR][1000 genomes]
rs74064260	1.00[AMR][1000 genomes]
rs74064264	1.00[AMR][1000 genomes]
rs74066310	1.00[AMR][1000 genomes]
rs74066311	1.00[AMR][1000 genomes]
rs74066323	1.00[AMR][1000 genomes]
rs74066324	1.00[AMR][1000 genomes]
rs74068928	1.00[AMR][1000 genomes]
rs7486079	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:25 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898872	chr12:21000586-21413632	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1048648	chr12:21007732-21410089	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv948700	chr12:21008498-21422492	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1047113	chr12:21008519-21402544	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv541411	chr12:21008519-21402544	ZNF genes & repeats Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv515735	chr12:21010048-21420712	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv933139	chr12:21011077-21404166	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv557710	chr12:21011480-21404832	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv933316	chr12:21017576-21404166	ZNF genes & repeats Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv469159	chr12:21124371-21404832	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv557717	chr12:21124371-21404832	Enhancers Strong transcription ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv1052587	chr12:21149131-21420712	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
13	nsv1050396	chr12:21152478-21420712	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
14	nsv1054132	chr12:21165101-21402544	Enhancers Strong transcription Genic enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
15	nsv541415	chr12:21165101-21402544	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
16	nsv933284	chr12:21171894-21404166	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
17	nsv1041711	chr12:21236384-21402544	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
18	nsv898883	chr12:21294293-21450917	Enhancers Active TSS Genic enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
19	nsv898885	chr12:21352541-21416413	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
20	nsv898886	chr12:21354494-21450250	Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
21	nsv898887	chr12:21355537-21416413	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
22	nsv898888	chr12:21355537-21426087	Strong transcription Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
23	nsv1044200	chr12:21357815-21410089	Weak transcription Active TSS ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
24	nsv983239	chr12:21392756-21405241	Weak transcription Enhancers Strong transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
25	esv3390939	chr12:21393734-21418537	Enhancers Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:21401400-21402400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links