Variant report

Variant	rs59017109
Chromosome Location	chr14:70251593-70251594
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs55668218	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55677947	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59710581	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59781261	1.00[AMR][1000 genomes]
rs60048839	1.00[AMR][1000 genomes]
rs73283370	1.00[AMR][1000 genomes]
rs73285222	1.00[AMR][1000 genomes]
rs74060478	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74060484	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74060497	1.00[AMR][1000 genomes]
rs74060550	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74060553	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74060556	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74060568	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74060569	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74060570	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74060572	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74060574	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74061417	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74061419	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74061423	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74061428	1.00[AMR][1000 genomes]
rs74061431	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74061432	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74061434	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74061442	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456336	chr14:70081956-70574149	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv565007	chr14:70081956-70574149	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70237000-70253200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:70237600-70253400	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr14:70238200-70263600	Weak transcription	Stomach Mucosa	stomach
4	chr14:70238400-70254600	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr14:70241000-70256200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr14:70241200-70251600	Weak transcription	Colonic Mucosa	Colon
7	chr14:70244200-70253400	Strong transcription	Brain Anterior Caudate	brain
8	chr14:70245400-70255000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr14:70245400-70256000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr14:70245600-70254600	Weak transcription	Fetal Kidney	kidney
11	chr14:70245600-70255000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr14:70245600-70257400	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr14:70245800-70254200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr14:70245800-70256200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr14:70246000-70252800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr14:70246000-70254800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr14:70246200-70251800	Weak transcription	Gastric	stomach
18	chr14:70246200-70251800	Weak transcription	Pancreas	Pancrea
19	chr14:70246200-70252800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr14:70246200-70252800	Weak transcription	Aorta	Aorta
21	chr14:70246200-70253000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr14:70246200-70253400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr14:70246200-70254400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr14:70246200-70255600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr14:70246200-70258400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr14:70246200-70259800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr14:70246400-70251600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr14:70246400-70251600	Weak transcription	Fetal Stomach	stomach
29	chr14:70246400-70252600	Weak transcription	Primary monocytes fromperipheralblood	blood
30	chr14:70246400-70253000	Weak transcription	Colon Smooth Muscle	Colon
31	chr14:70246400-70261800	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr14:70246400-70264000	Weak transcription	Fetal Intestine Small	intestine
33	chr14:70246600-70252800	Weak transcription	Adipose Nuclei	Adipose
34	chr14:70246600-70252800	Weak transcription	NHEK	skin
35	chr14:70246600-70256800	Weak transcription	Primary T cells fromperipheralblood	blood
36	chr14:70246600-70256800	Weak transcription	HSMMtube	muscle
37	chr14:70246800-70252800	Weak transcription	Primary hematopoietic stem cells	blood
38	chr14:70247000-70254200	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr14:70247000-70264600	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr14:70247400-70252800	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr14:70247400-70254800	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr14:70247800-70252000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr14:70247800-70254600	Weak transcription	Rectal Smooth Muscle	rectum
44	chr14:70248200-70251800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr14:70248200-70252800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr14:70248200-70252800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr14:70248200-70253000	Weak transcription	Primary T helper cells fromperipheralblood	blood
48	chr14:70248200-70255600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
49	chr14:70248200-70255600	Weak transcription	HMEC	breast
50	chr14:70248200-70256200	Weak transcription	Fetal Muscle Trunk	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links