Variant report

Variant	rs74060484
Chromosome Location	chr14:70325596-70325597
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs55668218	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55677947	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59017109	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59710581	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59781261	1.00[AMR][1000 genomes]
rs60048839	1.00[AMR][1000 genomes]
rs73283370	1.00[AMR][1000 genomes]
rs73285222	1.00[AMR][1000 genomes]
rs74060478	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74060497	1.00[AMR][1000 genomes]
rs74060550	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74060553	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74060556	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74060568	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74060569	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74060570	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74060572	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74060574	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74061417	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74061419	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74061423	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74061428	1.00[AMR][1000 genomes]
rs74061431	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74061432	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74061434	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74061442	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456336	chr14:70081956-70574149	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv565007	chr14:70081956-70574149	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
3	nsv832824	chr14:70320639-70511401	Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70317200-70325600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:70320800-70325600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr14:70321400-70326200	Weak transcription	Fetal Brain Male	brain
4	chr14:70323400-70327200	Weak transcription	Placenta	Placenta
5	chr14:70325400-70325600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
6	chr14:70325400-70325600	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr14:70325400-70325800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr14:70325400-70326000	Enhancers	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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