Variant report

Variant	rs74061419
Chromosome Location	chr14:70232832-70232833
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:70037278..70041103-chr14:70232570..70234461,4	MCF-7	breast:
2	chr14:69864846..69866528-chr14:70232343..70235201,2	K562	blood:
3	chr1:207494727..207495520-chr14:70232723..70233666,2	Hela-S3	cervix:
4	chr14:70077771..70080127-chr14:70232780..70235719,3	MCF-7	breast:
5	chr14:70232370..70233879-chr8:96280749..96282540,2	MCF-7	breast:
6	chr14:70078185..70080215-chr14:70232416..70234645,2	K562	blood:
7	chr14:70232739..70236319-chr14:70264002..70267714,4	MCF-7	breast:
8	chr14:70232529..70235203-chr3:112855285..112858190,2	MCF-7	breast:
9	chr14:70232810..70235786-chr14:71065753..71068797,4	MCF-7	breast:
10	chr14:70232711..70233593-chr17:8058943..8059803,2	Hela-S3	cervix:
11	chr14:70193435..70195061-chr14:70232589..70234499,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000100650	Chromatin interaction
ENSG00000253076	Chromatin interaction
ENSG00000253773	Chromatin interaction
ENSG00000196352	Chromatin interaction
ENSG00000179094	Chromatin interaction
ENSG00000100652	Chromatin interaction
ENSG00000029364	Chromatin interaction
ENSG00000255994	Chromatin interaction
ENSG00000156172	Chromatin interaction
ENSG00000100632	Chromatin interaction
ENSG00000267909	Chromatin interaction
ENSG00000133997	Chromatin interaction
ENSG00000100647	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs55668218	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55677947	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59017109	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59710581	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59781261	1.00[AMR][1000 genomes]
rs60048839	1.00[AMR][1000 genomes]
rs73283370	1.00[AMR][1000 genomes]
rs73285222	1.00[AMR][1000 genomes]
rs74060478	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74060484	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74060497	1.00[AMR][1000 genomes]
rs74060550	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74060553	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74060556	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74060568	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74060569	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74060570	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74060572	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74060574	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74061417	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74061423	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74061428	1.00[AMR][1000 genomes]
rs74061431	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74061432	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74061434	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74061442	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456336	chr14:70081956-70574149	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv565007	chr14:70081956-70574149	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
3	esv3425903	chr14:70232649-70235147	Bivalent/Poised TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70222400-70233000	Weak transcription	Primary B cells from peripheral blood	blood
2	chr14:70228000-70233000	Weak transcription	NH-A	brain
3	chr14:70228600-70233000	Weak transcription	NHEK	skin
4	chr14:70230200-70233000	Weak transcription	Duodenum Mucosa	Duodenum
5	chr14:70230400-70233200	Weak transcription	Stomach Mucosa	stomach
6	chr14:70231200-70233000	Weak transcription	HUVEC	blood vessel
7	chr14:70232200-70233200	Enhancers	Primary T cells from cord blood	blood
8	chr14:70232200-70233200	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr14:70232400-70233000	Enhancers	Primary T cells fromperipheralblood	blood
10	chr14:70232400-70233000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr14:70232400-70233000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr14:70232400-70233000	Enhancers	HepG2	liver
13	chr14:70232400-70233200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr14:70232400-70233200	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr14:70232400-70233200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
16	chr14:70232400-70233200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr14:70232400-70233200	Enhancers	Primary T killer memory cells from peripheral blood	blood
18	chr14:70232400-70233200	Enhancers	Brain Substantia Nigra	brain
19	chr14:70232400-70233200	Enhancers	Fetal Thymus	thymus
20	chr14:70232600-70233000	Enhancers	H9 Cell Line	embryonic stem cell
21	chr14:70232600-70233000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr14:70232600-70233000	Enhancers	Primary hematopoietic stem cells	blood
23	chr14:70232600-70233000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr14:70232600-70233000	Enhancers	Liver	Liver
25	chr14:70232600-70233000	Enhancers	Hela-S3	cervix
26	chr14:70232600-70233200	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr14:70232600-70233200	Enhancers	Primary monocytes fromperipheralblood	blood
28	chr14:70232600-70233200	Enhancers	Primary hematopoietic stem cells short term culture	blood
29	chr14:70232600-70233200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
30	chr14:70232600-70233200	Enhancers	Primary T helper naive cells from peripheral blood	blood
31	chr14:70232600-70233200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
32	chr14:70232600-70233200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
33	chr14:70232600-70233200	Active TSS	Fetal Heart	heart
34	chr14:70232600-70233200	Enhancers	Fetal Lung	lung
35	chr14:70232600-70233200	Enhancers	Thymus	Thymus
36	chr14:70232600-70233800	Active TSS	Skeletal Muscle Female	skeletal muscle
37	chr14:70232600-70234600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr14:70232600-70234800	Active TSS	Rectal Mucosa Donor 29	rectum
39	chr14:70232800-70233000	Enhancers	Primary B cells from cord blood	blood
40	chr14:70232800-70233000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr14:70232800-70233000	Enhancers	Brain Angular Gyrus	brain
42	chr14:70232800-70233200	Enhancers	Fetal Muscle Trunk	muscle
43	chr14:70232800-70233200	Enhancers	Placenta	Placenta
44	chr14:70232800-70233200	Enhancers	Monocytes-CD14+_RO01746	blood
45	chr14:70232800-70233600	Flanking Active TSS	Dnd41	blood
46	chr14:70232800-70233800	Weak transcription	Spleen	Spleen

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