Variant report
| Variant | rs74060572 |
|---|---|
| Chromosome Location | chr14:70301466-70301467 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr14:70299842..70301528-chr14:70310568..70312131,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs55668218 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs55677947 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59017109 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59710581 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59781261 | 1.00[AMR][1000 genomes] |
| rs60048839 | 1.00[AMR][1000 genomes] |
| rs73283370 | 1.00[AMR][1000 genomes] |
| rs73285222 | 1.00[AMR][1000 genomes] |
| rs74060478 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74060484 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74060497 | 1.00[AMR][1000 genomes] |
| rs74060550 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74060553 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74060556 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74060568 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74060569 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74060570 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74060574 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74061417 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74061419 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74061423 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74061428 | 1.00[AMR][1000 genomes] |
| rs74061431 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74061432 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74061434 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74061442 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv456336 | chr14:70081956-70574149 | Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 75 gene(s) | inside rSNPs | diseases |
| 2 | nsv565007 | chr14:70081956-70574149 | Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 75 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:70295800-70306400 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
