Variant report

Variant	rs74061432
Chromosome Location	chr14:70248722-70248723
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:70248146..70250325-chr14:70255541..70258035,3	MCF-7	breast:
2	chr14:70196914..70198429-chr14:70246802..70249135,2	MCF-7	breast:
3	chr14:70248266..70250866-chr14:70262587..70264942,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100652	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs55668218	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55677947	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59017109	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59710581	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59781261	1.00[AMR][1000 genomes]
rs60048839	1.00[AMR][1000 genomes]
rs73283370	1.00[AMR][1000 genomes]
rs73285222	1.00[AMR][1000 genomes]
rs74060478	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74060484	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74060497	1.00[AMR][1000 genomes]
rs74060550	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74060553	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74060556	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74060568	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74060569	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74060570	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74060572	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74060574	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74061417	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74061419	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74061423	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74061428	1.00[AMR][1000 genomes]
rs74061431	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74061434	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74061442	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456336	chr14:70081956-70574149	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv565007	chr14:70081956-70574149	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70235800-70248800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
2	chr14:70235800-70249200	Strong transcription	HSMM	muscle
3	chr14:70236000-70248800	Strong transcription	Primary neutrophils fromperipheralblood	blood
4	chr14:70236400-70248800	Strong transcription	Primary B cells from cord blood	blood
5	chr14:70236600-70249400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr14:70236800-70248800	Strong transcription	Rectal Mucosa Donor 29	rectum
7	chr14:70236800-70249000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr14:70236800-70249000	Strong transcription	Rectal Mucosa Donor 31	rectum
9	chr14:70237000-70253200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr14:70237400-70248800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr14:70237600-70248800	Strong transcription	Primary B cells from peripheral blood	blood
12	chr14:70237600-70248800	Strong transcription	Brain Substantia Nigra	brain
13	chr14:70237600-70248800	Strong transcription	NHLF	lung
14	chr14:70237600-70249000	Strong transcription	A549	lung
15	chr14:70237600-70253400	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr14:70237800-70248800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr14:70237800-70249000	Strong transcription	Duodenum Mucosa	Duodenum
18	chr14:70238200-70249000	Strong transcription	Stomach Smooth Muscle	stomach
19	chr14:70238200-70263600	Weak transcription	Stomach Mucosa	stomach
20	chr14:70238400-70254600	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr14:70239600-70249000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
22	chr14:70241000-70256200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr14:70241200-70251600	Weak transcription	Colonic Mucosa	Colon
24	chr14:70243200-70249200	Strong transcription	Fetal Thymus	thymus
25	chr14:70243600-70249200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr14:70244000-70249000	Strong transcription	Brain Inferior Temporal Lobe	brain
27	chr14:70244200-70248800	Strong transcription	Brain Cingulate Gyrus	brain
28	chr14:70244200-70253400	Strong transcription	Brain Anterior Caudate	brain
29	chr14:70244800-70248800	Strong transcription	Brain Germinal Matrix	brain
30	chr14:70244800-70250000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr14:70245000-70249200	Strong transcription	Primary T cells from cord blood	blood
32	chr14:70245400-70249600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr14:70245400-70250000	Weak transcription	Dnd41	blood
34	chr14:70245400-70250600	Strong transcription	Skeletal Muscle Female	skeletal muscle
35	chr14:70245400-70255000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
36	chr14:70245400-70256000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr14:70245600-70249400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr14:70245600-70250000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr14:70245600-70254600	Weak transcription	Fetal Kidney	kidney
40	chr14:70245600-70255000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr14:70245600-70257400	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr14:70245800-70254200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
43	chr14:70245800-70256200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr14:70246000-70249400	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr14:70246000-70249600	Weak transcription	Small Intestine	intestine
46	chr14:70246000-70252800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr14:70246000-70254800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr14:70246200-70250800	Weak transcription	Spleen	Spleen
49	chr14:70246200-70251400	Weak transcription	GM12878-XiMat	blood
50	chr14:70246200-70251800	Weak transcription	Gastric	stomach

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