Variant report

Variant	rs59048337
Chromosome Location	chr2:116013660-116013661
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10185352	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12466330	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12474896	0.91[ASN][1000 genomes]
rs12475000	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1607192	0.80[ASN][1000 genomes]
rs17044170	0.82[AMR][1000 genomes]
rs17044209	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs66950432	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs67070696	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs67201082	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs67300776	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs68044608	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7562421	0.84[ASN][1000 genomes]
rs7566462	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7566796	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7569580	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs973176	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014713	chr2:115858427-116018055	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1001542	chr2:115920847-116082585	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv834339	chr2:115953298-116132979	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:116012000-116013800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr2:116012600-116013800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr2:116013600-116014400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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