Variant report

Variant	rs7562421
Chromosome Location	chr2:116044587-116044588
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10174557	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10185352	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1155663	0.83[ASN][1000 genomes]
rs12466330	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12474896	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12475000	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13430426	0.81[ASN][1000 genomes]
rs1402448	0.82[ASN][1000 genomes]
rs1402449	0.83[ASN][1000 genomes]
rs1521072	0.80[ASN][1000 genomes]
rs1607192	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17044209	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17044293	0.83[ASN][1000 genomes]
rs2001800	0.84[ASN][1000 genomes]
rs56367866	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59048337	0.84[ASN][1000 genomes]
rs66950432	0.85[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs67092650	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67201082	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs68044608	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7558115	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7569580	0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7600222	0.95[AMR][1000 genomes]
rs9308712	0.81[ASN][1000 genomes]
rs949888	0.83[ASN][1000 genomes]
rs973176	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs975454	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001542	chr2:115920847-116082585	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv834339	chr2:115953298-116132979	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3382948	chr2:116042382-116045480	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
4	esv3393532	chr2:116043732-116044780	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:116043000-116051600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr2:116043400-116052400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr2:116044400-116044600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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