Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10174557	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10185352	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10187050	0.82[AMR][1000 genomes]
rs12466330	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12474896	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12475000	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1607192	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17044170	0.81[AMR][1000 genomes]
rs17044209	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4849385	0.82[AMR][1000 genomes]
rs4849386	0.82[AMR][1000 genomes]
rs66950432	0.86[ASN][1000 genomes]
rs67092650	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs67201082	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs68044608	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7558115	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7562421	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7565369	0.82[AMR][1000 genomes]
rs7569580	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7600222	0.92[AMR][1000 genomes]
rs973176	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs975454	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001542	chr2:115920847-116082585	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv834339	chr2:115953298-116132979	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:116050800-116068000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr2:116052800-116056000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr2:116053400-116056400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr2:116053800-116056200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr2:116054000-116057000	Weak transcription	Cortex derived primary cultured neurospheres	brain

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