Variant report
| Variant | rs66950432 |
|---|---|
| Chromosome Location | chr2:116077572-116077573 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10174557 | 0.81[AMR][1000 genomes];0.91[ASN][1000 genomes] |
| rs10185352 | 0.83[ASN][1000 genomes] |
| rs1155663 | 0.85[ASN][1000 genomes] |
| rs12466330 | 0.86[ASN][1000 genomes] |
| rs12474896 | 0.87[ASN][1000 genomes] |
| rs12475000 | 0.86[ASN][1000 genomes] |
| rs13430426 | 0.84[ASN][1000 genomes] |
| rs1402448 | 0.85[ASN][1000 genomes] |
| rs1402449 | 0.85[ASN][1000 genomes] |
| rs1521072 | 0.83[ASN][1000 genomes] |
| rs1607192 | 0.81[AMR][1000 genomes];0.99[ASN][1000 genomes] |
| rs17044209 | 0.81[ASN][1000 genomes] |
| rs17044293 | 0.85[ASN][1000 genomes] |
| rs2001800 | 0.87[ASN][1000 genomes] |
| rs56367866 | 0.86[ASN][1000 genomes] |
| rs59048337 | 0.83[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs67092650 | 0.81[AMR][1000 genomes];0.93[ASN][1000 genomes] |
| rs68044608 | 0.80[ASN][1000 genomes] |
| rs7558115 | 0.81[AMR][1000 genomes];0.96[ASN][1000 genomes] |
| rs7562421 | 0.85[AFR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7569580 | 0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs9308712 | 0.84[ASN][1000 genomes] |
| rs949888 | 0.85[ASN][1000 genomes] |
| rs973176 | 0.84[ASN][1000 genomes] |
| rs975454 | 0.90[AFR][1000 genomes];0.95[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1001542 | chr2:115920847-116082585 | Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv834339 | chr2:115953298-116132979 | Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | esv3451356 | chr2:116073771-116101275 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:116068000-116083000 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
| 2 | chr2:116070600-116082800 | Weak transcription | Ganglion Eminence derived primary cultured neurospheres | brain |
