Variant report

Variant	rs1402449
Chromosome Location	chr2:116146175-116146176
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10174557	0.88[ASN][1000 genomes]
rs1155663	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13430426	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1402448	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1521072	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1521082	0.88[AMR][1000 genomes]
rs1607192	0.85[ASN][1000 genomes]
rs17044293	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2001800	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2090802	0.85[ASN][1000 genomes]
rs66950432	0.85[ASN][1000 genomes]
rs67092650	0.90[ASN][1000 genomes]
rs7558115	0.88[ASN][1000 genomes]
rs7562421	0.83[ASN][1000 genomes]
rs7569580	0.81[ASN][1000 genomes]
rs9308712	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs949888	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs975454	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874918	chr2:116098665-116183946	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
2	nsv874919	chr2:116130709-116219686	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:116144000-116146400	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr2:116144800-116151200	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr2:116144800-116151200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr2:116144800-116151400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr2:116144800-116151600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr2:116144800-116152600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr2:116145800-116146200	Enhancers	Pancreas	Pancrea
8	chr2:116146000-116146600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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