Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10174557	0.86[ASN][1000 genomes]
rs10185352	0.84[ASN][1000 genomes]
rs1155663	0.81[ASN][1000 genomes]
rs12466330	0.87[ASN][1000 genomes]
rs12474896	0.89[ASN][1000 genomes]
rs12475000	0.87[ASN][1000 genomes]
rs13430426	0.80[ASN][1000 genomes]
rs1402448	0.81[ASN][1000 genomes]
rs1402449	0.81[ASN][1000 genomes]
rs1607192	0.95[ASN][1000 genomes]
rs17044209	0.82[ASN][1000 genomes]
rs17044293	0.81[ASN][1000 genomes]
rs2001800	0.83[ASN][1000 genomes]
rs56367866	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs59048337	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs66950432	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67092650	0.89[ASN][1000 genomes]
rs67201082	0.82[ASN][1000 genomes]
rs68044608	0.83[ASN][1000 genomes]
rs7558115	0.92[ASN][1000 genomes]
rs7562421	0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9308712	0.80[ASN][1000 genomes]
rs949888	0.81[ASN][1000 genomes]
rs973176	0.85[ASN][1000 genomes]
rs975454	0.82[AFR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001542	chr2:115920847-116082585	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv834339	chr2:115953298-116132979	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:116043000-116051600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr2:116043400-116052400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr2:116048800-116050200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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