Variant report

Variant	rs59092560
Chromosome Location	chr3:115800857-115800858
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10212348	1.00[EUR][1000 genomes]
rs10212349	1.00[EUR][1000 genomes]
rs10212350	1.00[EUR][1000 genomes]
rs10212351	1.00[EUR][1000 genomes]
rs11914439	1.00[EUR][1000 genomes]
rs11925181	1.00[EUR][1000 genomes]
rs11927187	1.00[EUR][1000 genomes]
rs13067904	1.00[EUR][1000 genomes]
rs13324181	1.00[EUR][1000 genomes]
rs1381071	1.00[EUR][1000 genomes]
rs1563936	1.00[EUR][1000 genomes]
rs1563939	1.00[EUR][1000 genomes]
rs16824706	1.00[EUR][1000 genomes]
rs1882011	1.00[EUR][1000 genomes]
rs1920361	1.00[EUR][1000 genomes]
rs28410403	1.00[EUR][1000 genomes]
rs4277686	1.00[EUR][1000 genomes]
rs59700272	1.00[EUR][1000 genomes]
rs6438298	1.00[EUR][1000 genomes]
rs6768516	1.00[EUR][1000 genomes]
rs6781359	1.00[EUR][1000 genomes]
rs6791561	1.00[EUR][1000 genomes]
rs6796602	1.00[EUR][1000 genomes]
rs72959750	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72959752	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9283565	1.00[EUR][1000 genomes]
rs9289043	1.00[EUR][1000 genomes]
rs9289044	1.00[EUR][1000 genomes]
rs9818490	1.00[EUR][1000 genomes]
rs9830788	1.00[EUR][1000 genomes]
rs9835051	1.00[EUR][1000 genomes]
rs9856732	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931948	chr3:114884574-115802562	Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv2760762	chr3:115476222-115807650	Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv829685	chr3:115643521-115812913	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv1012260	chr3:115680931-115935968	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv2756413	chr3:115721898-115908480	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	esv2751975	chr3:115766285-115902901	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:115780400-115830000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:115780600-115803800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr3:115799400-115806000	Weak transcription	Brain Cingulate Gyrus	brain
4	chr3:115800000-115802600	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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