Variant report

Variant	rs59116647
Chromosome Location	chr10:116503473-116503474
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1323443	1.00[AMR][1000 genomes]
rs17092493	1.00[AMR][1000 genomes]
rs61078246	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73357617	1.00[AMR][1000 genomes]
rs73362063	1.00[AMR][1000 genomes]
rs73362076	1.00[AMR][1000 genomes]
rs73371871	1.00[AMR][1000 genomes]
rs73373722	1.00[AMR][1000 genomes]
rs73373727	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73373777	1.00[AMR][1000 genomes]
rs763863	1.00[AMR][1000 genomes]
rs7911471	1.00[AMR][1000 genomes]
rs7914014	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037308	chr10:116141946-116519765	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv540780	chr10:116141946-116519765	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv949138	chr10:116311531-116874477	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv1038050	chr10:116315109-116895719	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv533027	chr10:116344641-116856352	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
6	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
7	nsv1042170	chr10:116455043-116504871	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv1046888	chr10:116455043-116505640	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116486800-116514600	Weak transcription	Pancreas	Pancrea
2	chr10:116494400-116508200	Weak transcription	Right Atrium	heart
3	chr10:116497400-116507000	Weak transcription	Right Ventricle	heart
4	chr10:116502400-116503600	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr10:116502400-116507200	Weak transcription	Fetal Intestine Large	intestine
6	chr10:116503000-116504000	Enhancers	Fetal Heart	heart
7	chr10:116503000-116505200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr10:116503200-116504000	Weak transcription	Primary hematopoietic stem cells	blood
9	chr10:116503200-116505000	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr10:116503200-116514600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr10:116503400-116503800	Enhancers	Left Ventricle	heart
12	chr10:116503400-116504400	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr10:116503400-116505000	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr10:116503400-116505000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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