Variant report

Variant	rs7914014
Chromosome Location	chr10:116562704-116562705
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1323443	1.00[AMR][1000 genomes]
rs17092493	1.00[AMR][1000 genomes]
rs59116647	1.00[AMR][1000 genomes]
rs61078246	1.00[AMR][1000 genomes]
rs73357617	1.00[AMR][1000 genomes]
rs73362063	1.00[AMR][1000 genomes]
rs73362076	1.00[AMR][1000 genomes]
rs73371871	1.00[AMR][1000 genomes]
rs73373722	1.00[AMR][1000 genomes]
rs73373727	1.00[AMR][1000 genomes]
rs73373777	1.00[AMR][1000 genomes]
rs763863	1.00[AMR][1000 genomes]
rs7911471	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949138	chr10:116311531-116874477	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1038050	chr10:116315109-116895719	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv533027	chr10:116344641-116856352	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	esv1814163	chr10:116519705-116582581	Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116556800-116566400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr10:116556800-116572800	Weak transcription	Pancreas	Pancrea
3	chr10:116560600-116566000	Weak transcription	Hela-S3	cervix
4	chr10:116561400-116562800	Enhancers	Fetal Thymus	thymus
5	chr10:116561400-116566600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr10:116561400-116568000	Weak transcription	HSMMtube	muscle
7	chr10:116561600-116562800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
8	chr10:116561600-116563000	Enhancers	Primary T cells fromperipheralblood	blood
9	chr10:116561600-116563200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr10:116561600-116563200	Enhancers	Thymus	Thymus
11	chr10:116561600-116566200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr10:116561600-116566800	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr10:116561800-116562800	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr10:116561800-116562800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr10:116561800-116562800	Enhancers	Dnd41	blood
16	chr10:116561800-116570600	Weak transcription	Primary hematopoietic stem cells	blood
17	chr10:116562000-116570400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr10:116562400-116568400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr10:116562400-116568600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr10:116562600-116568000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr10:116562600-116569400	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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