Variant report

Variant	rs73357617
Chromosome Location	chr10:116526839-116526840
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:116526447..116528712-chr10:116580718..116582885,3	MCF-7	breast:
2	chr10:116510537..116513350-chr10:116526093..116528633,2	MCF-7	breast:
3	chr10:116483992..116485637-chr10:116525925..116527534,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151553	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1323443	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17092493	1.00[AMR][1000 genomes]
rs59116647	1.00[AMR][1000 genomes]
rs61078246	1.00[AMR][1000 genomes]
rs73362063	1.00[AMR][1000 genomes]
rs73362076	1.00[AMR][1000 genomes]
rs73371871	1.00[AMR][1000 genomes]
rs73373722	1.00[AMR][1000 genomes]
rs73373727	1.00[AMR][1000 genomes]
rs73373777	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs763863	1.00[AMR][1000 genomes]
rs7911471	1.00[AMR][1000 genomes]
rs7914014	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949138	chr10:116311531-116874477	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1038050	chr10:116315109-116895719	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv533027	chr10:116344641-116856352	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	esv1814163	chr10:116519705-116582581	Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116513800-116527000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:116515000-116527400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr10:116525600-116528400	Active TSS	Right Atrium	heart
4	chr10:116526000-116527000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
5	chr10:116526000-116527400	Active TSS	Psoas Muscle	Psoas
6	chr10:116526200-116527000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr10:116526200-116527000	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
8	chr10:116526200-116527000	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
9	chr10:116526200-116527000	Enhancers	Stomach Mucosa	stomach
10	chr10:116526200-116527200	Enhancers	Liver	Liver
11	chr10:116526200-116527400	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
12	chr10:116526200-116527600	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
13	chr10:116526200-116528200	Active TSS	Fetal Intestine Small	intestine
14	chr10:116526200-116528600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
15	chr10:116526200-116528600	Active TSS	Right Ventricle	heart
16	chr10:116526400-116527000	Enhancers	H9 Cell Line	embryonic stem cell
17	chr10:116526400-116527000	Enhancers	Primary hematopoietic stem cells	blood
18	chr10:116526400-116527000	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr10:116526400-116527000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr10:116526400-116527000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr10:116526400-116527000	Enhancers	A549	lung
22	chr10:116526400-116527200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr10:116526400-116527200	Bivalent Enhancer	Primary T helper naive cells from peripheral blood	blood
24	chr10:116526400-116527200	Active TSS	Fetal Intestine Large	intestine
25	chr10:116526400-116527600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr10:116526400-116527600	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
27	chr10:116526400-116527600	Bivalent/Poised TSS	Fetal Brain Male	brain
28	chr10:116526400-116527800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr10:116526600-116527000	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
30	chr10:116526600-116527000	Bivalent Enhancer	HUVEC	blood vessel
31	chr10:116526600-116527200	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
32	chr10:116526600-116527200	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
33	chr10:116526600-116527200	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
34	chr10:116526600-116527200	Bivalent Enhancer	Primary T killer memory cells from peripheral blood	blood
35	chr10:116526600-116527200	Enhancers	Colonic Mucosa	Colon
36	chr10:116526600-116527200	Bivalent Enhancer	Colon Smooth Muscle	Colon
37	chr10:116526600-116527200	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum
38	chr10:116526600-116527200	Bivalent/Poised TSS	Fetal Muscle Leg	muscle
39	chr10:116526600-116527200	Enhancers	NH-A	brain
40	chr10:116526600-116527200	Flanking Active TSS	NHEK	skin
41	chr10:116526600-116527400	Bivalent Enhancer	Primary B cells from peripheral blood	blood
42	chr10:116526600-116527400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
43	chr10:116526600-116527400	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
44	chr10:116526600-116527400	Bivalent Enhancer	Fetal Lung	lung
45	chr10:116526600-116527400	Weak transcription	Pancreas	Pancrea
46	chr10:116526600-116527400	Flanking Active TSS	Hela-S3	cervix
47	chr10:116526600-116527600	Flanking Active TSS	Adipose Nuclei	Adipose
48	chr10:116526600-116528200	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
49	chr10:116526600-116528400	Active TSS	Left Ventricle	heart
50	chr10:116526600-116528600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell

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