Variant report

Variant	rs763863
Chromosome Location	chr10:116457418-116457419
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:116455556..116457603-chr10:116458669..116461297,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1323443	1.00[AMR][1000 genomes]
rs17092493	1.00[AMR][1000 genomes]
rs59116647	1.00[AMR][1000 genomes]
rs61078246	1.00[AMR][1000 genomes]
rs73357617	1.00[AMR][1000 genomes]
rs73362063	1.00[AMR][1000 genomes]
rs73362076	1.00[AMR][1000 genomes]
rs73371871	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73373722	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73373727	1.00[AMR][1000 genomes]
rs73373777	1.00[AMR][1000 genomes]
rs7911471	1.00[AMR][1000 genomes]
rs7914014	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037308	chr10:116141946-116519765	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv540780	chr10:116141946-116519765	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv949138	chr10:116311531-116874477	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv1038050	chr10:116315109-116895719	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv533027	chr10:116344641-116856352	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
6	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
7	nsv1042170	chr10:116455043-116504871	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv1046888	chr10:116455043-116505640	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv1038822	chr10:116455647-116497204	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116446000-116459200	Weak transcription	Fetal Intestine Small	intestine
2	chr10:116451200-116464600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr10:116453800-116457600	Enhancers	Fetal Heart	heart
4	chr10:116456000-116457600	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr10:116456600-116457600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr10:116456600-116458200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr10:116456800-116457600	Enhancers	NH-A	brain
8	chr10:116457200-116458400	Weak transcription	Right Atrium	heart
9	chr10:116457200-116458400	Enhancers	HSMMtube	muscle
10	chr10:116457400-116457600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr10:116457400-116457600	Enhancers	Pancreatic Islets	Pancreatic Islet
12	chr10:116457400-116458200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr10:116457400-116458400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr10:116457400-116458400	Weak transcription	Colon Smooth Muscle	Colon
15	chr10:116457400-116458400	Weak transcription	Right Ventricle	heart
16	chr10:116457400-116458600	Enhancers	Hela-S3	cervix
17	chr10:116457400-116458600	Enhancers	HSMM	muscle
18	chr10:116457400-116458800	Enhancers	Muscle Satellite Cultured Cells	--
19	chr10:116457400-116460200	Weak transcription	Psoas Muscle	Psoas
20	chr10:116457400-116463400	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr10:116457400-116466200	Weak transcription	Adipose Nuclei	Adipose
22	chr10:116457400-116468000	Weak transcription	A549	lung
23	chr10:116457400-116468200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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