Variant report

Variant	rs7911471
Chromosome Location	chr10:116558671-116558672
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1323443	1.00[AMR][1000 genomes]
rs17092493	1.00[AMR][1000 genomes]
rs59116647	1.00[AMR][1000 genomes]
rs61078246	1.00[AMR][1000 genomes]
rs73357617	1.00[AMR][1000 genomes]
rs73362063	1.00[AMR][1000 genomes]
rs73362076	1.00[AMR][1000 genomes]
rs73371871	1.00[AMR][1000 genomes]
rs73373722	1.00[AMR][1000 genomes]
rs73373727	1.00[AMR][1000 genomes]
rs73373777	1.00[AMR][1000 genomes]
rs763863	1.00[AMR][1000 genomes]
rs7914014	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949138	chr10:116311531-116874477	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1038050	chr10:116315109-116895719	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv533027	chr10:116344641-116856352	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	esv1814163	chr10:116519705-116582581	Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116553800-116559400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr10:116555200-116558800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr10:116556600-116560800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr10:116556800-116566400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr10:116556800-116572800	Weak transcription	Pancreas	Pancrea
6	chr10:116557000-116559600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr10:116557600-116559200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr10:116557800-116558800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr10:116557800-116559000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr10:116558400-116559000	Weak transcription	Primary T cells fromperipheralblood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links