Variant report

Variant	rs59211330
Chromosome Location	chr6:71961195-71961196
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:71955241..71957809-chr6:71959379..71962225,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-B3GAT2-2	chr6:71961061-71961324	ENSG00000232295.1

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs13191832	1.00[ASN][1000 genomes]
rs28635853	1.00[EUR][1000 genomes]
rs57905824	1.00[EUR][1000 genomes]
rs59056640	1.00[EUR][1000 genomes]
rs60980578	1.00[EUR][1000 genomes]
rs6455413	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6932369	1.00[ASN][1000 genomes]
rs6937214	1.00[EUR][1000 genomes]
rs73749854	1.00[EUR][1000 genomes]
rs7745843	1.00[ASN][1000 genomes]
rs9364143	1.00[ASN][1000 genomes]
rs9364145	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9455377	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763953	chr6:71954956-71968035	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71955600-71972600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:71957400-71962400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr6:71957800-71961200	Enhancers	NHDF-Ad	bronchial
4	chr6:71957800-71965000	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr6:71958000-71961400	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr6:71958000-71961400	Enhancers	Placenta	Placenta
7	chr6:71958000-71965000	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr6:71958200-71961200	Enhancers	NHLF	lung
9	chr6:71958200-71963000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
10	chr6:71958400-71962200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr6:71958400-71963400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr6:71958600-71961800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr6:71958600-71962000	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr6:71958600-71962400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr6:71958600-71963400	Enhancers	Primary hematopoietic stem cells	blood
16	chr6:71958800-71962600	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr6:71959000-71962600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr6:71959000-71964000	Weak transcription	Fetal Kidney	kidney
19	chr6:71959400-71964000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr6:71959400-71964200	Weak transcription	Fetal Muscle Leg	muscle
21	chr6:71959400-71964400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr6:71959800-71967800	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr6:71960200-71962000	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr6:71960200-71962800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr6:71960200-71963600	Weak transcription	Right Atrium	heart
26	chr6:71960200-71964400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr6:71960200-71964600	Enhancers	Primary B cells from cord blood	blood
28	chr6:71960400-71961200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr6:71960400-71963800	Weak transcription	HSMMtube	muscle
30	chr6:71960600-71961200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr6:71960600-71961200	Enhancers	Muscle Satellite Cultured Cells	--
32	chr6:71960600-71963000	Enhancers	HUVEC	blood vessel
33	chr6:71960800-71961200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
34	chr6:71960800-71961400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr6:71961000-71961200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr6:71961000-71961200	Enhancers	Spleen	Spleen
37	chr6:71961000-71961400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr6:71961000-71961400	Enhancers	Left Ventricle	heart
39	chr6:71961000-71961400	Enhancers	Lung	lung
40	chr6:71961000-71961400	Enhancers	Right Ventricle	heart
41	chr6:71961000-71962200	Enhancers	Brain Hippocampus Middle	brain
42	chr6:71961000-71962600	Weak transcription	Adipose Nuclei	Adipose
43	chr6:71961000-71963400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr6:71961000-71963400	Weak transcription	HSMM	muscle
45	chr6:71961000-71964000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr6:71961000-71964400	Enhancers	Primary B cells from peripheral blood	blood

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