Variant report

Variant	rs9364145
Chromosome Location	chr6:71960755-71960756
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:71955241..71957809-chr6:71959379..71962225,3	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs13191832	1.00[ASN][1000 genomes]
rs17767520	1.00[AMR][1000 genomes]
rs28635853	1.00[EUR][1000 genomes]
rs57905824	1.00[EUR][1000 genomes]
rs59056640	1.00[EUR][1000 genomes]
rs59211330	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60980578	1.00[EUR][1000 genomes]
rs6455413	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6932369	1.00[ASN][1000 genomes]
rs6937214	1.00[EUR][1000 genomes]
rs73749854	1.00[EUR][1000 genomes]
rs7745843	1.00[ASN][1000 genomes]
rs9364143	1.00[ASN][1000 genomes]
rs9455377	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763953	chr6:71954956-71968035	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71954600-71961000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:71955600-71972600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:71957400-71962400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr6:71957800-71961200	Enhancers	NHDF-Ad	bronchial
5	chr6:71957800-71965000	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr6:71958000-71960800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:71958000-71960800	Enhancers	HMEC	breast
8	chr6:71958000-71960800	Enhancers	NH-A	brain
9	chr6:71958000-71961000	Enhancers	Hela-S3	cervix
10	chr6:71958000-71961000	Enhancers	HSMM	muscle
11	chr6:71958000-71961400	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr6:71958000-71961400	Enhancers	Placenta	Placenta
13	chr6:71958000-71965000	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr6:71958200-71961000	Enhancers	Adipose Nuclei	Adipose
15	chr6:71958200-71961200	Enhancers	NHLF	lung
16	chr6:71958200-71963000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
17	chr6:71958400-71961000	Weak transcription	Right Ventricle	heart
18	chr6:71958400-71962200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr6:71958400-71963400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr6:71958600-71961000	Weak transcription	Brain Hippocampus Middle	brain
21	chr6:71958600-71961800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr6:71958600-71962000	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr6:71958600-71962400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr6:71958600-71963400	Enhancers	Primary hematopoietic stem cells	blood
25	chr6:71958800-71961000	Weak transcription	Left Ventricle	heart
26	chr6:71958800-71962600	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr6:71959000-71962600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr6:71959000-71964000	Weak transcription	Fetal Kidney	kidney
29	chr6:71959200-71960800	Weak transcription	Spleen	Spleen
30	chr6:71959400-71964000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr6:71959400-71964200	Weak transcription	Fetal Muscle Leg	muscle
32	chr6:71959400-71964400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr6:71959600-71960800	Enhancers	Placenta Amnion	Placenta Amnion
34	chr6:71959600-71960800	Enhancers	Small Intestine	intestine
35	chr6:71959800-71960800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr6:71959800-71961000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr6:71959800-71967800	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr6:71960000-71960800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr6:71960200-71960800	Enhancers	Osteobl	bone
40	chr6:71960200-71961000	Weak transcription	Primary B cells from peripheral blood	blood
41	chr6:71960200-71962000	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr6:71960200-71962800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr6:71960200-71963600	Weak transcription	Right Atrium	heart
44	chr6:71960200-71964400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr6:71960200-71964600	Enhancers	Primary B cells from cord blood	blood
46	chr6:71960400-71960800	Enhancers	Primary neutrophils fromperipheralblood	blood
47	chr6:71960400-71961200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr6:71960400-71963800	Weak transcription	HSMMtube	muscle
49	chr6:71960600-71960800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr6:71960600-71960800	Enhancers	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links