Variant report

Variant	rs6937214
Chromosome Location	chr6:71897830-71897831
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10080657	1.00[AMR][1000 genomes]
rs28635853	1.00[EUR][1000 genomes]
rs57905824	1.00[EUR][1000 genomes]
rs59056640	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59211330	1.00[EUR][1000 genomes]
rs60980578	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6455413	1.00[EUR][1000 genomes]
rs73747110	1.00[AMR][1000 genomes]
rs73747111	1.00[AMR][1000 genomes]
rs73747115	1.00[AMR][1000 genomes]
rs73749828	1.00[AMR][1000 genomes]
rs73749854	1.00[EUR][1000 genomes]
rs9364145	1.00[EUR][1000 genomes]
rs9446348	1.00[AMR][1000 genomes]
rs9446372	1.00[AMR][1000 genomes]
rs9446375	1.00[AMR][1000 genomes]
rs9446377	1.00[AMR][1000 genomes]
rs9455369	1.00[AMR][1000 genomes]
rs9455376	1.00[AMR][1000 genomes]
rs9455377	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9455430	1.00[AMR][1000 genomes]
rs9455434	1.00[AMR][1000 genomes]
rs9455435	1.00[AMR][1000 genomes]
rs9455436	1.00[AMR][1000 genomes]
rs9455437	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527265	chr6:71867477-71902656	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv886149	chr6:71875777-71936292	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv886150	chr6:71888871-71936292	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1016393	chr6:71890237-71941786	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv526921	chr6:71890237-71950242	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71891800-71907200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:71896600-71898000	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr6:71896600-71898000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr6:71897000-71898000	Enhancers	Primary hematopoietic stem cells	blood
5	chr6:71897000-71898600	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr6:71897200-71898000	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr6:71897200-71898000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:71897600-71898000	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr6:71897600-71898600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:71897800-71898200	Enhancers	NHEK	skin
11	chr6:71897800-71898400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr6:71897800-71898600	Enhancers	HMEC	breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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