Variant report

Variant	rs9446372
Chromosome Location	chr6:72005061-72005062
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10080657	1.00[AMR][1000 genomes]
rs59056640	1.00[AMR][1000 genomes]
rs60980578	1.00[AMR][1000 genomes]
rs6937214	1.00[AMR][1000 genomes]
rs73747110	1.00[AMR][1000 genomes]
rs73747111	1.00[AMR][1000 genomes]
rs73747115	1.00[AMR][1000 genomes]
rs73749828	1.00[AMR][1000 genomes]
rs9446348	1.00[AMR][1000 genomes]
rs9446370	1.00[YRI][hapmap]
rs9446375	1.00[AMR][1000 genomes]
rs9446377	1.00[AMR][1000 genomes]
rs9455369	1.00[AMR][1000 genomes]
rs9455376	1.00[AMR][1000 genomes]
rs9455377	1.00[AMR][1000 genomes]
rs9455424	0.82[YRI][hapmap]
rs9455430	1.00[AMR][1000 genomes]
rs9455434	1.00[AMR][1000 genomes]
rs9455435	1.00[AMR][1000 genomes]
rs9455436	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs9455437	1.00[AMR][1000 genomes]
rs9455458	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1795873	chr6:71997278-72005794	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv1841286	chr6:71997278-72006512	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1802752	chr6:71998480-72005794	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71999600-72012600	Weak transcription	Colonic Mucosa	Colon
2	chr6:71999800-72008000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr6:71999800-72008200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr6:71999800-72008400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr6:71999800-72010400	Weak transcription	Primary T cells from cord blood	blood
6	chr6:71999800-72011200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:71999800-72015200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr6:71999800-72033800	Weak transcription	Right Ventricle	heart
9	chr6:72000000-72007800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr6:72000000-72008000	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr6:72000000-72009400	Weak transcription	Duodenum Mucosa	Duodenum
12	chr6:72000000-72012800	Weak transcription	Brain Germinal Matrix	brain
13	chr6:72000000-72013200	Weak transcription	Rectal Smooth Muscle	rectum
14	chr6:72000000-72014200	Weak transcription	Thymus	Thymus
15	chr6:72000000-72015400	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr6:72000600-72009400	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr6:72000800-72017600	Weak transcription	Fetal Heart	heart
18	chr6:72001000-72008400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr6:72001000-72012000	Weak transcription	Colon Smooth Muscle	Colon
20	chr6:72001000-72021600	Weak transcription	Fetal Lung	lung
21	chr6:72001000-72038800	Weak transcription	Aorta	Aorta
22	chr6:72001400-72014200	Weak transcription	Fetal Intestine Small	intestine
23	chr6:72001600-72006000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr6:72001800-72013200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr6:72001800-72020000	Weak transcription	Fetal Brain Female	brain
26	chr6:72002000-72005200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr6:72002000-72007800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr6:72002000-72008200	Weak transcription	Hela-S3	cervix
29	chr6:72002000-72010400	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr6:72002000-72013400	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr6:72002000-72014600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr6:72002000-72017600	Weak transcription	Brain Cingulate Gyrus	brain
33	chr6:72002000-72022000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr6:72002200-72006000	Weak transcription	Primary T helper cells fromperipheralblood	blood
35	chr6:72002200-72011000	Weak transcription	Brain Anterior Caudate	brain
36	chr6:72002200-72011200	Weak transcription	Fetal Brain Male	brain
37	chr6:72002200-72011600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr6:72002200-72015400	Weak transcription	GM12878-XiMat	blood
39	chr6:72003000-72007000	Strong transcription	Primary hematopoietic stem cells	blood
40	chr6:72003000-72011800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr6:72003200-72005600	Genic enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr6:72003200-72011600	Strong transcription	Primary B cells from peripheral blood	blood
43	chr6:72003200-72013200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr6:72003200-72014400	Strong transcription	Primary B cells from cord blood	blood
45	chr6:72003200-72016200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr6:72003400-72005200	Genic enhancers	Muscle Satellite Cultured Cells	--
47	chr6:72003400-72006800	Strong transcription	Cortex derived primary cultured neurospheres	brain
48	chr6:72003400-72007000	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
49	chr6:72003400-72007000	Strong transcription	Liver	Liver
50	chr6:72003600-72005400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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