Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10080657	1.00[AMR][1000 genomes]
rs28635853	1.00[EUR][1000 genomes]
rs57905824	1.00[EUR][1000 genomes]
rs59211330	1.00[EUR][1000 genomes]
rs60980578	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6455413	1.00[EUR][1000 genomes]
rs6937214	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73747110	1.00[AMR][1000 genomes]
rs73747111	1.00[AMR][1000 genomes]
rs73747115	1.00[AMR][1000 genomes]
rs73749828	1.00[AMR][1000 genomes]
rs73749854	1.00[EUR][1000 genomes]
rs9364145	1.00[EUR][1000 genomes]
rs9446348	1.00[AMR][1000 genomes]
rs9446372	1.00[AMR][1000 genomes]
rs9446375	1.00[AMR][1000 genomes]
rs9446377	1.00[AMR][1000 genomes]
rs9455369	1.00[AMR][1000 genomes]
rs9455376	1.00[AMR][1000 genomes]
rs9455377	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9455430	1.00[AMR][1000 genomes]
rs9455434	1.00[AMR][1000 genomes]
rs9455435	1.00[AMR][1000 genomes]
rs9455436	1.00[AMR][1000 genomes]
rs9455437	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886149	chr6:71875777-71936292	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv886150	chr6:71888871-71936292	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1016393	chr6:71890237-71941786	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv526921	chr6:71890237-71950242	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71907600-71909000	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr6:71907800-71908800	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr6:71907800-71908800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr6:71907800-71909000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr6:71907800-71909000	Enhancers	HSMM	muscle
6	chr6:71908000-71909000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:71908000-71909000	Enhancers	HSMMtube	muscle
8	chr6:71908000-71914400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:71908000-71915200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr6:71908000-71915400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr6:71908600-71910400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr6:71908600-71914400	Weak transcription	Muscle Satellite Cultured Cells	--

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