Variant report

Variant	rs60980578
Chromosome Location	chr6:71904926-71904927
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10080657	1.00[AMR][1000 genomes]
rs28635853	1.00[EUR][1000 genomes]
rs57905824	1.00[EUR][1000 genomes]
rs59056640	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59211330	1.00[EUR][1000 genomes]
rs6455413	1.00[EUR][1000 genomes]
rs6937214	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73747110	1.00[AMR][1000 genomes]
rs73747111	1.00[AMR][1000 genomes]
rs73747115	1.00[AMR][1000 genomes]
rs73749828	1.00[AMR][1000 genomes]
rs73749854	1.00[EUR][1000 genomes]
rs9364145	1.00[EUR][1000 genomes]
rs9446348	1.00[AMR][1000 genomes]
rs9446372	1.00[AMR][1000 genomes]
rs9446375	1.00[AMR][1000 genomes]
rs9446377	1.00[AMR][1000 genomes]
rs9455369	1.00[AMR][1000 genomes]
rs9455376	1.00[AMR][1000 genomes]
rs9455377	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9455430	1.00[AMR][1000 genomes]
rs9455434	1.00[AMR][1000 genomes]
rs9455435	1.00[AMR][1000 genomes]
rs9455436	1.00[AMR][1000 genomes]
rs9455437	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886149	chr6:71875777-71936292	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv886150	chr6:71888871-71936292	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1016393	chr6:71890237-71941786	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv526921	chr6:71890237-71950242	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71891800-71907200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:71898000-71907400	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr6:71901400-71906600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr6:71903200-71906800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:71903200-71907000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr6:71904200-71905000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr6:71904200-71905000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr6:71904200-71905000	Enhancers	NHLF	lung
9	chr6:71904200-71905200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:71904200-71905200	Enhancers	Hela-S3	cervix
11	chr6:71904200-71905400	Enhancers	A549	lung
12	chr6:71904200-71905600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr6:71904200-71906800	Enhancers	HSMMtube	muscle
14	chr6:71904200-71907000	Enhancers	Muscle Satellite Cultured Cells	--
15	chr6:71904200-71907200	Enhancers	Osteobl	bone
16	chr6:71904200-71907400	Enhancers	HSMM	muscle
17	chr6:71904400-71905000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr6:71904400-71907400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr6:71904600-71905000	Weak transcription	Adipose Nuclei	Adipose
20	chr6:71904600-71906800	Weak transcription	NH-A	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links