Variant report

Variant	rs59348422
Chromosome Location	chr7:84473017-84473018
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:84471463..84475053-chr7:84476999..84480448,4	K562	blood:
2	chr7:84465310..84468926-chr7:84469765..84473361,5	K562	blood:
3	chr7:84466265..84469196-chr7:84470899..84473576,3	K562	blood:

Variant related genes	Relation type
ENSG00000235243	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10262482	1.00[EUR][1000 genomes]
rs10281350	1.00[EUR][1000 genomes]
rs12334064	1.00[EUR][1000 genomes]
rs56308636	1.00[AMR][1000 genomes]
rs56385102	1.00[AMR][1000 genomes]
rs58138808	1.00[AMR][1000 genomes]
rs58925383	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59657041	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59846257	1.00[AMR][1000 genomes]
rs60691164	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61463589	1.00[AMR][1000 genomes]
rs73711226	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73711260	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73711608	1.00[AMR][1000 genomes]
rs73711610	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73711612	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73711613	1.00[AMR][1000 genomes]
rs73711614	1.00[AMR][1000 genomes]
rs73711617	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73711623	1.00[AMR][1000 genomes]
rs73711626	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73711630	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73712829	1.00[AMR][1000 genomes]
rs73712831	1.00[AMR][1000 genomes]
rs73712836	1.00[AMR][1000 genomes]
rs73712837	1.00[AMR][1000 genomes]
rs73712839	1.00[AMR][1000 genomes]
rs73712853	1.00[AMR][1000 genomes]
rs73712858	1.00[AMR][1000 genomes]
rs73712859	1.00[AMR][1000 genomes]
rs73712862	1.00[AMR][1000 genomes]
rs73713538	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73713540	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73713545	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73713546	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73713548	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73713549	1.00[AMR][1000 genomes]
rs73713555	1.00[AMR][1000 genomes]
rs73713879	1.00[AMR][1000 genomes]
rs73713880	1.00[AMR][1000 genomes]
rs73713913	1.00[AMR][1000 genomes]
rs73713928	1.00[AMR][1000 genomes]
rs73713929	1.00[AMR][1000 genomes]
rs73713930	1.00[AMR][1000 genomes]
rs73713931	1.00[AMR][1000 genomes]
rs73713936	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529344	chr7:83714286-84592857	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv949446	chr7:84003501-84763823	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv831049	chr7:84277599-84475710	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv34238	chr7:84279023-84591966	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv831050	chr7:84355996-84527261	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:84467200-84476800	Weak transcription	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links