Variant report

Variant	rs59846257
Chromosome Location	chr7:84668975-84668976
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs55907213	1.00[AMR][1000 genomes]
rs56385102	1.00[AMR][1000 genomes]
rs58925383	1.00[AMR][1000 genomes]
rs59348422	1.00[AMR][1000 genomes]
rs59657041	1.00[AMR][1000 genomes]
rs61155011	1.00[AMR][1000 genomes]
rs73703759	1.00[AMR][1000 genomes]
rs73703761	1.00[AMR][1000 genomes]
rs73703764	1.00[AMR][1000 genomes]
rs73711260	1.00[AMR][1000 genomes]
rs73711608	1.00[AMR][1000 genomes]
rs73711610	1.00[AMR][1000 genomes]
rs73711612	1.00[AMR][1000 genomes]
rs73711613	1.00[AMR][1000 genomes]
rs73711614	1.00[AMR][1000 genomes]
rs73711617	1.00[AMR][1000 genomes]
rs73711623	1.00[AMR][1000 genomes]
rs73711626	1.00[AMR][1000 genomes]
rs73711630	1.00[AMR][1000 genomes]
rs73713538	1.00[AMR][1000 genomes]
rs73713540	1.00[AMR][1000 genomes]
rs73713545	1.00[AMR][1000 genomes]
rs73713546	1.00[AMR][1000 genomes]
rs73713548	1.00[AMR][1000 genomes]
rs73713549	1.00[AMR][1000 genomes]
rs73713555	1.00[AMR][1000 genomes]
rs73713879	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73713880	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73713913	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73713928	1.00[AMR][1000 genomes]
rs73713929	1.00[AMR][1000 genomes]
rs73713930	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73713931	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73713936	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949446	chr7:84003501-84763823	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	esv2422324	chr7:84530290-84944913	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:84655000-84673600	Weak transcription	Fetal Brain Male	brain
2	chr7:84656200-84694800	Weak transcription	Fetal Stomach	stomach
3	chr7:84660600-84671200	Weak transcription	NHDF-Ad	bronchial
4	chr7:84664600-84680200	Weak transcription	Fetal Lung	lung
5	chr7:84666200-84671000	Weak transcription	Fetal Kidney	kidney
6	chr7:84667600-84669000	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr7:84668800-84669200	Flanking Active TSS	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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