Variant report

Variant	rs73711617
Chromosome Location	chr7:84539005-84539006
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:84538401..84539949-chr7:84543555..84545339,2	K562	blood:
2	chr7:84538449..84540115-chr7:84542353..84545055,2	K562	blood:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10262482	1.00[EUR][1000 genomes]
rs10281350	1.00[EUR][1000 genomes]
rs12334064	1.00[EUR][1000 genomes]
rs55907213	1.00[AMR][1000 genomes]
rs56308636	1.00[AMR][1000 genomes]
rs56385102	1.00[AMR][1000 genomes]
rs58138808	1.00[AMR][1000 genomes]
rs58925383	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59348422	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59657041	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59846257	1.00[AMR][1000 genomes]
rs60691164	1.00[AMR][1000 genomes]
rs61155011	1.00[AMR][1000 genomes]
rs61463589	1.00[AMR][1000 genomes]
rs73703759	1.00[AMR][1000 genomes]
rs73703761	1.00[AMR][1000 genomes]
rs73703764	1.00[AMR][1000 genomes]
rs73711226	1.00[AMR][1000 genomes]
rs73711260	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73711608	1.00[AMR][1000 genomes]
rs73711610	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73711612	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73711613	1.00[AMR][1000 genomes]
rs73711614	1.00[AMR][1000 genomes]
rs73711623	1.00[AMR][1000 genomes]
rs73711626	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73711630	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73712831	1.00[AMR][1000 genomes]
rs73712836	1.00[AMR][1000 genomes]
rs73712837	1.00[AMR][1000 genomes]
rs73712839	1.00[AMR][1000 genomes]
rs73712853	1.00[AMR][1000 genomes]
rs73712858	1.00[AMR][1000 genomes]
rs73712859	1.00[AMR][1000 genomes]
rs73712862	1.00[AMR][1000 genomes]
rs73713538	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73713540	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73713545	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73713546	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73713548	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73713549	1.00[AMR][1000 genomes]
rs73713555	1.00[AMR][1000 genomes]
rs73713879	1.00[AMR][1000 genomes]
rs73713880	1.00[AMR][1000 genomes]
rs73713913	1.00[AMR][1000 genomes]
rs73713928	1.00[AMR][1000 genomes]
rs73713929	1.00[AMR][1000 genomes]
rs73713930	1.00[AMR][1000 genomes]
rs73713931	1.00[AMR][1000 genomes]
rs73713936	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529344	chr7:83714286-84592857	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv949446	chr7:84003501-84763823	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	esv34238	chr7:84279023-84591966	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv2422324	chr7:84530290-84944913	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:84534400-84542600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:84534800-84539200	Weak transcription	Gastric	stomach
3	chr7:84536400-84542000	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr7:84536400-84542600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr7:84536800-84539400	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr7:84537600-84542400	Weak transcription	NHLF	lung
7	chr7:84537800-84543000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr7:84538000-84539600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr7:84538000-84542600	Weak transcription	Colon Smooth Muscle	Colon
10	chr7:84538400-84542400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr7:84538600-84542400	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr7:84538800-84539200	Enhancers	Rectal Smooth Muscle	rectum
13	chr7:84538800-84542800	Weak transcription	NH-A	brain
14	chr7:84539000-84541000	Enhancers	K562	blood

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