Variant report
| Variant | rs73713913 |
|---|---|
| Chromosome Location | chr7:84615782-84615783 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:84609474..84613107-chr7:84613651..84618012,3 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000229251 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:37)
| rs_ID | r2[population] |
|---|---|
| rs55907213 | 1.00[AMR][1000 genomes] |
| rs56385102 | 1.00[AMR][1000 genomes] |
| rs58925383 | 1.00[AMR][1000 genomes] |
| rs59348422 | 1.00[AMR][1000 genomes] |
| rs59657041 | 1.00[AMR][1000 genomes] |
| rs59846257 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs60691164 | 1.00[AMR][1000 genomes] |
| rs61155011 | 1.00[AMR][1000 genomes] |
| rs73703759 | 1.00[AMR][1000 genomes] |
| rs73703761 | 1.00[AMR][1000 genomes] |
| rs73703764 | 1.00[AMR][1000 genomes] |
| rs73711226 | 1.00[AMR][1000 genomes] |
| rs73711260 | 1.00[AMR][1000 genomes] |
| rs73711608 | 1.00[AMR][1000 genomes] |
| rs73711610 | 1.00[AMR][1000 genomes] |
| rs73711612 | 1.00[AMR][1000 genomes] |
| rs73711613 | 1.00[AMR][1000 genomes] |
| rs73711614 | 1.00[AMR][1000 genomes] |
| rs73711617 | 1.00[AMR][1000 genomes] |
| rs73711623 | 1.00[AMR][1000 genomes] |
| rs73711626 | 1.00[AMR][1000 genomes] |
| rs73711630 | 1.00[AMR][1000 genomes] |
| rs73712862 | 1.00[AMR][1000 genomes] |
| rs73713538 | 1.00[AMR][1000 genomes] |
| rs73713540 | 1.00[AMR][1000 genomes] |
| rs73713545 | 1.00[AMR][1000 genomes] |
| rs73713546 | 1.00[AMR][1000 genomes] |
| rs73713548 | 1.00[AMR][1000 genomes] |
| rs73713549 | 1.00[AMR][1000 genomes] |
| rs73713555 | 1.00[AMR][1000 genomes] |
| rs73713879 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73713880 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73713928 | 1.00[AMR][1000 genomes] |
| rs73713929 | 1.00[AMR][1000 genomes] |
| rs73713930 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73713931 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73713936 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949446 | chr7:84003501-84763823 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 20 gene(s) | inside rSNPs | diseases |
| 2 | esv2422324 | chr7:84530290-84944913 | Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive region | 7 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:84613800-84616400 | Weak transcription | Right Atrium | heart |
| 2 | chr7:84614800-84616200 | Enhancers | Rectal Smooth Muscle | rectum |
