Variant report

Variant	rs59481855
Chromosome Location	chr11:74399350-74399351
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:74396286..74400034-chr11:74405980..74408368,3	K562	blood:
2	chr11:74390056..74393770-chr11:74396439..74399617,3	K562	blood:
3	chr11:74397489..74402633-chr11:74403415..74405795,5	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10160407	1.00[ASN][1000 genomes]
rs11236224	1.00[ASN][1000 genomes]
rs11236229	1.00[ASN][1000 genomes]
rs11236247	1.00[ASN][1000 genomes]
rs11236249	1.00[ASN][1000 genomes]
rs11236259	1.00[ASN][1000 genomes]
rs11501909	1.00[ASN][1000 genomes]
rs11501910	1.00[ASN][1000 genomes]
rs12270712	1.00[ASN][1000 genomes]
rs12271211	1.00[ASN][1000 genomes]
rs12272764	1.00[ASN][1000 genomes]
rs12274227	1.00[ASN][1000 genomes]
rs12275056	1.00[ASN][1000 genomes]
rs12278314	1.00[ASN][1000 genomes]
rs12283412	1.00[ASN][1000 genomes]
rs12283768	1.00[ASN][1000 genomes]
rs12286425	1.00[ASN][1000 genomes]
rs12286482	1.00[ASN][1000 genomes]
rs12287287	1.00[ASN][1000 genomes]
rs12288052	1.00[ASN][1000 genomes]
rs12290339	1.00[ASN][1000 genomes]
rs4133526	1.00[ASN][1000 genomes]
rs56306513	1.00[ASN][1000 genomes]
rs57031821	1.00[ASN][1000 genomes]
rs6592593	1.00[ASN][1000 genomes]
rs7109667	1.00[ASN][1000 genomes]
rs7125078	1.00[ASN][1000 genomes]
rs7128783	1.00[ASN][1000 genomes]
rs72991236	1.00[ASN][1000 genomes]
rs72991239	1.00[ASN][1000 genomes]
rs72991244	1.00[ASN][1000 genomes]
rs73490680	1.00[ASN][1000 genomes]
rs73490691	1.00[ASN][1000 genomes]
rs73492727	1.00[ASN][1000 genomes]
rs73492743	1.00[ASN][1000 genomes]
rs73492794	1.00[ASN][1000 genomes]
rs7928010	1.00[ASN][1000 genomes]
rs7947106	1.00[ASN][1000 genomes]
rs9943586	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757451	chr11:73842609-74545888	Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	esv2759837	chr11:73842609-74557597	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
3	esv34979	chr11:73878688-74533452	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
4	esv2758277	chr11:73887567-74557597	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
5	nsv825994	chr11:73936667-74534455	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
6	nsv932190	chr11:74359867-74618935	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74395000-74399600	Weak transcription	Psoas Muscle	Psoas
2	chr11:74395000-74407000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr11:74395200-74404600	Weak transcription	Pancreas	Pancrea
4	chr11:74395200-74406800	Weak transcription	Right Ventricle	heart
5	chr11:74395600-74406800	Weak transcription	Lung	lung
6	chr11:74395600-74406800	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr11:74396000-74405000	Weak transcription	Colon Smooth Muscle	Colon
8	chr11:74396400-74399400	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr11:74396400-74399400	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr11:74397400-74401200	Enhancers	Osteobl	bone
11	chr11:74397400-74401400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr11:74397600-74399600	Enhancers	NHDF-Ad	bronchial
13	chr11:74397600-74400000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr11:74397600-74401200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr11:74397600-74401400	Enhancers	Muscle Satellite Cultured Cells	--
16	chr11:74397800-74399400	Enhancers	Adipose Nuclei	Adipose
17	chr11:74397800-74399400	Enhancers	HSMM	muscle
18	chr11:74397800-74399400	Enhancers	NHLF	lung
19	chr11:74397800-74399800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr11:74397800-74401200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr11:74397800-74401400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr11:74398000-74399400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr11:74398000-74399400	Enhancers	Hela-S3	cervix
24	chr11:74398000-74401000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr11:74398000-74401200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr11:74398200-74399800	Enhancers	HMEC	breast
27	chr11:74398400-74399400	Enhancers	Breast Myoepithelial Primary Cells	Breast
28	chr11:74398600-74399400	Enhancers	A549	lung
29	chr11:74398600-74399400	Enhancers	HSMMtube	muscle
30	chr11:74398600-74399600	Enhancers	Cortex derived primary cultured neurospheres	brain
31	chr11:74398800-74408000	Weak transcription	K562	blood
32	chr11:74399000-74399400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr11:74399000-74399400	Enhancers	Duodenum Smooth Muscle	Duodenum
34	chr11:74399000-74399600	Enhancers	Right Atrium	heart
35	chr11:74399000-74400000	Enhancers	Spleen	Spleen
36	chr11:74399200-74399400	Enhancers	iPS-15b Cell Line	embryonic stem cell
37	chr11:74399200-74399400	Enhancers	Stomach Smooth Muscle	stomach
38	chr11:74399200-74400000	Enhancers	Brain Anterior Caudate	brain
39	chr11:74399200-74400400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr11:74399200-74400600	Weak transcription	NH-A	brain
41	chr11:74399200-74402600	Weak transcription	Skeletal Muscle Male	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links