Variant report

Variant	rs73492794
Chromosome Location	chr11:74574759-74574760
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:74459747..74461427-chr11:74574531..74576961,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166439	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10160407	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10501418	0.91[EUR][1000 genomes]
rs11236224	1.00[ASN][1000 genomes]
rs11236229	1.00[ASN][1000 genomes]
rs11236239	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11236247	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11236249	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11236259	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11236293	0.83[AMR][1000 genomes]
rs11501909	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11501910	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12098929	1.00[AMR][1000 genomes]
rs12270712	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12271211	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12271960	0.83[AMR][1000 genomes]
rs12272764	1.00[ASN][1000 genomes]
rs12273852	0.83[AMR][1000 genomes]
rs12274227	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12275050	0.83[AMR][1000 genomes]
rs12275056	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12278314	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12283412	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12283768	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12284331	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12285302	0.82[AFR][1000 genomes]
rs12286425	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12286482	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12287287	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12288052	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12290339	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12292428	0.83[AMR][1000 genomes]
rs12295546	0.83[AMR][1000 genomes]
rs13343191	1.00[AMR][1000 genomes]
rs1439677	0.83[AMR][1000 genomes]
rs28637653	0.85[AMR][1000 genomes]
rs4133526	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56306513	1.00[ASN][1000 genomes]
rs57031821	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59481855	1.00[ASN][1000 genomes]
rs6592593	1.00[ASN][1000 genomes]
rs7109667	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7111955	0.83[AMR][1000 genomes]
rs7125078	1.00[ASN][1000 genomes]
rs7128783	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72991236	1.00[ASN][1000 genomes]
rs72991239	1.00[ASN][1000 genomes]
rs72991244	1.00[ASN][1000 genomes]
rs73490680	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73490691	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73492727	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73492743	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73496929	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73496931	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73498736	0.83[AMR][1000 genomes]
rs73498737	0.83[AMR][1000 genomes]
rs7928010	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7947106	1.00[ASN][1000 genomes]
rs9943586	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932190	chr11:74359867-74618935	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	41 gene(s)	inside rSNPs	diseases
2	nsv897917	chr11:74474266-74595507	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv832210	chr11:74562782-74732133	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74528000-74576400	Weak transcription	Stomach Mucosa	stomach
2	chr11:74552800-74576800	Strong transcription	Stomach Smooth Muscle	stomach
3	chr11:74562200-74595800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr11:74563400-74576600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr11:74563600-74576400	Weak transcription	Colon Smooth Muscle	Colon
6	chr11:74564800-74576600	Weak transcription	NH-A	brain
7	chr11:74567200-74575600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr11:74567200-74576200	Strong transcription	Primary T cells from cord blood	blood
9	chr11:74567400-74576000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr11:74567600-74575200	Strong transcription	Brain Inferior Temporal Lobe	brain
11	chr11:74567600-74576400	Strong transcription	Brain Anterior Caudate	brain
12	chr11:74569400-74575600	Strong transcription	Brain Hippocampus Middle	brain
13	chr11:74569600-74574800	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr11:74569600-74575000	Strong transcription	Fetal Kidney	kidney
15	chr11:74569600-74576000	Strong transcription	Skeletal Muscle Female	skeletal muscle
16	chr11:74569800-74575200	Strong transcription	Primary T helper naive cells from peripheral blood	blood
17	chr11:74569800-74575200	Strong transcription	Skeletal Muscle Male	skeletal muscle
18	chr11:74569800-74576000	Strong transcription	Rectal Mucosa Donor 31	rectum
19	chr11:74569800-74576200	Strong transcription	Placenta Amnion	Placenta Amnion
20	chr11:74569800-74577200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr11:74569800-74588400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr11:74570000-74575200	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
23	chr11:74570000-74576400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr11:74570000-74577000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
25	chr11:74570000-74588400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr11:74570200-74575600	Strong transcription	Pancreas	Pancrea
27	chr11:74570600-74578800	ZNF genes & repeats	Fetal Brain Female	brain
28	chr11:74570600-74585600	ZNF genes & repeats	Dnd41	blood
29	chr11:74570600-74588400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
30	chr11:74570800-74574800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
31	chr11:74570800-74574800	ZNF genes & repeats	GM12878-XiMat	blood
32	chr11:74570800-74575200	Strong transcription	Gastric	stomach
33	chr11:74570800-74576800	Strong transcription	Muscle Satellite Cultured Cells	--
34	chr11:74570800-74578800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr11:74570800-74579400	ZNF genes & repeats	Fetal Intestine Small	intestine
36	chr11:74570800-74579800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
37	chr11:74570800-74584800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr11:74571000-74588400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
39	chr11:74571200-74575000	Strong transcription	Brain Substantia Nigra	brain
40	chr11:74571200-74576200	ZNF genes & repeats	Primary B cells from peripheral blood	blood
41	chr11:74571200-74577000	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr11:74571200-74584400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr11:74571200-74585200	ZNF genes & repeats	Brain Germinal Matrix	brain
44	chr11:74571400-74574800	Strong transcription	Brain Angular Gyrus	brain
45	chr11:74571400-74574800	Strong transcription	Rectal Smooth Muscle	rectum
46	chr11:74571600-74574800	Weak transcription	Right Ventricle	heart
47	chr11:74571600-74578600	ZNF genes & repeats	Fetal Muscle Leg	muscle
48	chr11:74571800-74575000	Strong transcription	HUVEC	blood vessel
49	chr11:74572000-74575000	Strong transcription	Primary T cells fromperipheralblood	blood
50	chr11:74572200-74574800	Strong transcription	Cortex derived primary cultured neurospheres	brain

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