Variant report

Variant	rs12271960
Chromosome Location	chr11:74706815-74706816
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:74705906..74708555-chr11:74716655..74718649,2	K562	blood:
2	chr11:74704735..74707299-chr11:74968333..74971046,2	K562	blood:
3	chr11:74698148..74702654-chr11:74704592..74707989,9	K562	blood:
4	chr11:74705536..74708184-chr11:74711771..74713788,3	K562	blood:

Variant related genes	Relation type
ENSG00000162139	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10160407	0.83[AMR][1000 genomes]
rs11236247	1.00[AMR][1000 genomes]
rs11236249	0.83[AMR][1000 genomes]
rs11236259	0.83[AMR][1000 genomes]
rs11236293	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11501910	0.83[AMR][1000 genomes]
rs12098929	0.83[AMR][1000 genomes]
rs12271211	1.00[AMR][1000 genomes]
rs12273852	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12274227	0.83[AMR][1000 genomes]
rs12275050	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12275056	1.00[AMR][1000 genomes]
rs12278314	0.83[AMR][1000 genomes]
rs12283412	0.83[AMR][1000 genomes]
rs12284331	0.83[AMR][1000 genomes]
rs12286425	0.83[AMR][1000 genomes]
rs12286482	0.83[AMR][1000 genomes]
rs12287287	0.83[AMR][1000 genomes]
rs12288052	0.83[AMR][1000 genomes]
rs12289885	1.00[ASN][1000 genomes]
rs12290239	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12292428	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12295546	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13343191	0.83[AMR][1000 genomes]
rs1439677	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28637653	0.80[EUR][1000 genomes]
rs4133526	0.83[AMR][1000 genomes]
rs57031821	0.83[AMR][1000 genomes]
rs7111955	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72992687	1.00[ASN][1000 genomes]
rs72994528	1.00[ASN][1000 genomes]
rs73490680	1.00[AMR][1000 genomes]
rs73490691	1.00[AMR][1000 genomes]
rs73492727	0.83[AMR][1000 genomes]
rs73492743	0.83[AMR][1000 genomes]
rs73492794	0.83[AMR][1000 genomes]
rs73496929	0.83[AMR][1000 genomes]
rs73496931	0.83[AMR][1000 genomes]
rs73498736	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73498737	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7928010	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832210	chr11:74562782-74732133	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74700400-74716400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:74700400-74723000	Weak transcription	Small Intestine	intestine
3	chr11:74700600-74716400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:74700600-74716400	Weak transcription	Aorta	Aorta
5	chr11:74700600-74716400	Weak transcription	Esophagus	oesophagus
6	chr11:74700600-74716400	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr11:74700600-74716600	Weak transcription	Fetal Brain Male	brain
8	chr11:74700600-74722600	Weak transcription	HSMM	muscle
9	chr11:74700600-74725000	Weak transcription	HSMMtube	muscle
10	chr11:74700800-74716400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr11:74700800-74716400	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr11:74700800-74716400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr11:74700800-74716400	Weak transcription	Stomach Smooth Muscle	stomach
14	chr11:74700800-74716400	Weak transcription	NHLF	lung
15	chr11:74700800-74716600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr11:74701000-74707600	Weak transcription	Right Atrium	heart
17	chr11:74701000-74716400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr11:74701000-74716400	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr11:74701000-74716400	Weak transcription	Colonic Mucosa	Colon
20	chr11:74701000-74716600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr11:74701000-74716600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr11:74701000-74716600	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr11:74701000-74716600	Weak transcription	Colon Smooth Muscle	Colon
24	chr11:74701000-74716600	Weak transcription	NH-A	brain
25	chr11:74701000-74722000	Weak transcription	Fetal Kidney	kidney
26	chr11:74701000-74722600	Weak transcription	HUVEC	blood vessel
27	chr11:74701000-74723800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr11:74701200-74716400	Weak transcription	A549	lung
29	chr11:74701400-74716400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr11:74701600-74721600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr11:74701800-74716600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr11:74702400-74716600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr11:74702400-74716600	Weak transcription	Fetal Heart	heart
34	chr11:74702400-74722800	Weak transcription	Stomach Mucosa	stomach
35	chr11:74702800-74716400	Weak transcription	Pancreas	Pancrea
36	chr11:74702800-74717600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr11:74703200-74707800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr11:74703200-74720600	Weak transcription	Psoas Muscle	Psoas
39	chr11:74704400-74708400	Strong transcription	Fetal Thymus	thymus
40	chr11:74704600-74707200	Strong transcription	Primary T helper cells PMA-I stimulated	--
41	chr11:74704600-74707400	Strong transcription	Primary T helper cells fromperipheralblood	blood
42	chr11:74704800-74708400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr11:74704800-74710200	Strong transcription	Primary T cells from cord blood	blood
44	chr11:74704800-74710800	Strong transcription	Monocytes-CD14+_RO01746	blood
45	chr11:74704800-74711200	Strong transcription	Primary monocytes fromperipheralblood	blood
46	chr11:74705000-74708200	Strong transcription	Primary B cells from peripheral blood	blood
47	chr11:74705000-74708200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr11:74705200-74707200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr11:74705200-74707400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr11:74705200-74707800	Strong transcription	Duodenum Mucosa	Duodenum

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