Variant report

Variant	rs73496929
Chromosome Location	chr11:74622953-74622954
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:74617868..74619628-chr11:74622578..74625095,2	K562	blood:

Variant related genes	Relation type
ENSG00000166435	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10160407	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11236224	1.00[ASN][1000 genomes]
rs11236229	1.00[ASN][1000 genomes]
rs11236239	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11236247	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11236249	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11236259	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11236293	0.83[AMR][1000 genomes]
rs11501909	1.00[ASN][1000 genomes]
rs11501910	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12098929	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12270712	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12271211	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12271960	0.83[AMR][1000 genomes]
rs12272764	1.00[ASN][1000 genomes]
rs12273852	0.83[AMR][1000 genomes]
rs12274227	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12275050	0.83[AMR][1000 genomes]
rs12275056	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12278314	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12283412	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12283768	1.00[ASN][1000 genomes]
rs12284331	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12286425	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12286482	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12287287	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12288052	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12290339	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12292428	0.83[AMR][1000 genomes]
rs12295546	0.83[AMR][1000 genomes]
rs13343191	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1439677	0.83[AMR][1000 genomes]
rs28637653	0.85[AMR][1000 genomes]
rs4133526	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56306513	1.00[ASN][1000 genomes]
rs57031821	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6592593	1.00[ASN][1000 genomes]
rs7109667	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7111955	0.83[AMR][1000 genomes]
rs7125078	1.00[ASN][1000 genomes]
rs7128783	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72991236	1.00[ASN][1000 genomes]
rs72991239	1.00[ASN][1000 genomes]
rs72991244	1.00[ASN][1000 genomes]
rs73490680	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73490691	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73492727	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73492743	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73492794	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73496931	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73498736	0.83[AMR][1000 genomes]
rs73498737	0.83[AMR][1000 genomes]
rs7928010	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7947106	1.00[ASN][1000 genomes]
rs9943586	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832210	chr11:74562782-74732133	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74587400-74629600	Weak transcription	Gastric	stomach
2	chr11:74588400-74630600	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr11:74588400-74636000	Weak transcription	NHLF	lung
4	chr11:74594800-74646600	Weak transcription	Small Intestine	intestine
5	chr11:74598400-74629600	Weak transcription	Colon Smooth Muscle	Colon
6	chr11:74606600-74626400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr11:74607600-74637400	Weak transcription	Pancreas	Pancrea
8	chr11:74612400-74629600	Weak transcription	NHDF-Ad	bronchial
9	chr11:74612800-74634000	Weak transcription	Psoas Muscle	Psoas
10	chr11:74613400-74632600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr11:74613600-74624000	Weak transcription	Brain Cingulate Gyrus	brain
12	chr11:74613600-74627800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr11:74613800-74628600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr11:74613800-74637400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr11:74614400-74623000	Strong transcription	Fetal Intestine Small	intestine
16	chr11:74614600-74633600	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr11:74615000-74629600	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr11:74615000-74629600	Weak transcription	NH-A	brain
19	chr11:74615000-74636200	Weak transcription	A549	lung
20	chr11:74615200-74632600	Strong transcription	Liver	Liver
21	chr11:74615200-74637200	Weak transcription	HMEC	breast
22	chr11:74615400-74623600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr11:74615400-74626400	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr11:74615600-74626600	Strong transcription	Dnd41	blood
25	chr11:74615800-74633600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
26	chr11:74615800-74644800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr11:74616000-74634200	Strong transcription	Duodenum Mucosa	Duodenum
28	chr11:74616000-74634800	Strong transcription	Fetal Intestine Large	intestine
29	chr11:74616200-74626800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr11:74616200-74634000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr11:74616400-74623600	Strong transcription	Primary T cells fromperipheralblood	blood
32	chr11:74616400-74633600	Strong transcription	Stomach Smooth Muscle	stomach
33	chr11:74616400-74634400	Strong transcription	Primary T cells from cord blood	blood
34	chr11:74616400-74646000	Weak transcription	Spleen	Spleen
35	chr11:74616400-74656200	Weak transcription	Stomach Mucosa	stomach
36	chr11:74616600-74623200	Strong transcription	Adipose Nuclei	Adipose
37	chr11:74616600-74623400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr11:74616600-74629200	Weak transcription	Fetal Thymus	thymus
39	chr11:74616600-74632600	Strong transcription	Primary T helper cells fromperipheralblood	blood
40	chr11:74616600-74632600	Strong transcription	Rectal Mucosa Donor 29	rectum
41	chr11:74617000-74631800	Weak transcription	HUVEC	blood vessel
42	chr11:74617200-74623800	Strong transcription	Thymus	Thymus
43	chr11:74617200-74624800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr11:74617200-74630000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
45	chr11:74617200-74635200	Strong transcription	Fetal Muscle Trunk	muscle
46	chr11:74617400-74626200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr11:74617400-74627200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr11:74617400-74629600	Weak transcription	Lung	lung
49	chr11:74617400-74648200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr11:74618000-74623800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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