Variant report

Variant	rs11236293
Chromosome Location	chr11:74737647-74737648
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:74735037..74738076-chr11:74739578..74743137,3	K562	blood:
2	chr11:74731114..74733845-chr11:74735387..74737744,2	K562	blood:
3	chr11:74699633..74701295-chr11:74736217..74739161,2	K562	blood:

Variant related genes	Relation type
ENSG00000162139	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10160407	0.83[AMR][1000 genomes]
rs11236259	0.83[AMR][1000 genomes]
rs11501910	0.83[AMR][1000 genomes]
rs12098929	0.83[AMR][1000 genomes]
rs12271960	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12273852	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12274227	0.83[AMR][1000 genomes]
rs12275050	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12278314	0.83[AMR][1000 genomes]
rs12283412	0.83[AMR][1000 genomes]
rs12284331	0.83[AMR][1000 genomes]
rs12286425	0.83[AMR][1000 genomes]
rs12286482	0.83[AMR][1000 genomes]
rs12287287	0.83[AMR][1000 genomes]
rs12288052	0.83[AMR][1000 genomes]
rs12289885	1.00[ASN][1000 genomes]
rs12290239	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12292428	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12295546	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13343191	0.83[AMR][1000 genomes]
rs1439677	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4133526	0.83[AMR][1000 genomes]
rs57031821	0.83[AMR][1000 genomes]
rs7111955	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72992687	1.00[ASN][1000 genomes]
rs72994528	1.00[ASN][1000 genomes]
rs73492727	0.83[AMR][1000 genomes]
rs73492743	0.83[AMR][1000 genomes]
rs73492794	0.83[AMR][1000 genomes]
rs73496929	0.83[AMR][1000 genomes]
rs73496931	0.83[AMR][1000 genomes]
rs73498736	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73498737	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7928010	0.83[AMR][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74726600-74746400	Weak transcription	GM12878-XiMat	blood
2	chr11:74732000-74737800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr11:74733200-74738400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr11:74734400-74742200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr11:74734600-74739000	Weak transcription	Psoas Muscle	Psoas
6	chr11:74735000-74739200	Weak transcription	NHDF-Ad	bronchial
7	chr11:74735200-74741600	Weak transcription	Left Ventricle	heart
8	chr11:74735400-74738600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr11:74735400-74742400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr11:74736400-74737800	Weak transcription	K562	blood
11	chr11:74736400-74741800	Weak transcription	Brain Angular Gyrus	brain
12	chr11:74736400-74741800	Weak transcription	Brain Substantia Nigra	brain
13	chr11:74736400-74741800	Weak transcription	Fetal Intestine Large	intestine
14	chr11:74736600-74738800	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr11:74736600-74742200	Weak transcription	Fetal Intestine Small	intestine
16	chr11:74736800-74738200	Weak transcription	Skeletal Muscle Female	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links