Variant report

Variant	rs12098929
Chromosome Location	chr11:74678574-74678575
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10160407	1.00[AMR][1000 genomes]
rs11236239	0.83[AMR][1000 genomes]
rs11236247	0.83[AMR][1000 genomes]
rs11236249	1.00[AMR][1000 genomes]
rs11236259	1.00[AMR][1000 genomes]
rs11236293	0.83[AMR][1000 genomes]
rs11501910	1.00[AMR][1000 genomes]
rs12271211	0.83[AMR][1000 genomes]
rs12271960	0.83[AMR][1000 genomes]
rs12273852	0.83[AMR][1000 genomes]
rs12274227	1.00[AMR][1000 genomes]
rs12275050	0.83[AMR][1000 genomes]
rs12275056	0.83[AMR][1000 genomes]
rs12278314	1.00[AMR][1000 genomes]
rs12283412	1.00[AMR][1000 genomes]
rs12284331	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12286425	1.00[AMR][1000 genomes]
rs12286482	1.00[AMR][1000 genomes]
rs12287287	1.00[AMR][1000 genomes]
rs12288052	1.00[AMR][1000 genomes]
rs12290339	0.83[AMR][1000 genomes]
rs12292428	0.83[AMR][1000 genomes]
rs12295546	0.83[AMR][1000 genomes]
rs13343191	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1439677	0.83[AMR][1000 genomes]
rs28637653	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4133526	1.00[AMR][1000 genomes]
rs57031821	1.00[AMR][1000 genomes]
rs7109667	0.83[AMR][1000 genomes]
rs7111955	0.83[AMR][1000 genomes]
rs7128783	0.83[AMR][1000 genomes]
rs73490680	0.83[AMR][1000 genomes]
rs73490691	0.83[AMR][1000 genomes]
rs73492727	1.00[AMR][1000 genomes]
rs73492743	1.00[AMR][1000 genomes]
rs73492794	1.00[AMR][1000 genomes]
rs73496929	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73496931	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73498736	0.83[AMR][1000 genomes]
rs73498737	0.83[AMR][1000 genomes]
rs7928010	1.00[AMR][1000 genomes]
rs9943586	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832210	chr11:74562782-74732133	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74661200-74688600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:74661600-74686000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr11:74661800-74699200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr11:74661800-74699400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr11:74662000-74680800	Weak transcription	Fetal Kidney	kidney
6	chr11:74662000-74682200	Weak transcription	Aorta	Aorta
7	chr11:74662000-74682800	Weak transcription	Colonic Mucosa	Colon
8	chr11:74662200-74699600	Weak transcription	Esophagus	oesophagus
9	chr11:74662400-74680600	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr11:74662400-74691400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr11:74662600-74682800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr11:74662600-74686000	Weak transcription	Fetal Brain Male	brain
13	chr11:74662800-74682200	Weak transcription	Lung	lung
14	chr11:74663200-74680000	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr11:74664000-74680400	Weak transcription	HMEC	breast
16	chr11:74665600-74686000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr11:74667600-74689000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr11:74667800-74683200	Weak transcription	Small Intestine	intestine
19	chr11:74667800-74692200	Strong transcription	Dnd41	blood
20	chr11:74668000-74680800	Weak transcription	Brain Angular Gyrus	brain
21	chr11:74668600-74682400	Weak transcription	Right Ventricle	heart
22	chr11:74671000-74682200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr11:74671600-74686400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr11:74671800-74682000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr11:74672000-74682000	Weak transcription	Brain Anterior Caudate	brain
26	chr11:74672000-74692000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr11:74672400-74680400	Weak transcription	Fetal Brain Female	brain
28	chr11:74672400-74690600	Strong transcription	Monocytes-CD14+_RO01746	blood
29	chr11:74673400-74679800	Weak transcription	HepG2	liver
30	chr11:74673400-74682000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr11:74673400-74683200	Weak transcription	Gastric	stomach
32	chr11:74673400-74683200	Weak transcription	Pancreas	Pancrea
33	chr11:74673400-74686000	Weak transcription	Psoas Muscle	Psoas
34	chr11:74673400-74691000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr11:74673400-74694400	Weak transcription	Stomach Mucosa	stomach
36	chr11:74673800-74679200	Strong transcription	Primary B cells from cord blood	blood
37	chr11:74673800-74691600	Strong transcription	Primary B cells from peripheral blood	blood
38	chr11:74674000-74679800	Weak transcription	Primary hematopoietic stem cells	blood
39	chr11:74674000-74692200	Strong transcription	GM12878-XiMat	blood
40	chr11:74674400-74678600	Strong transcription	Primary T helper cells PMA-I stimulated	--
41	chr11:74674400-74690600	Strong transcription	Primary monocytes fromperipheralblood	blood
42	chr11:74674600-74692000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
43	chr11:74674600-74692000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr11:74674800-74692400	Strong transcription	Fetal Thymus	thymus
45	chr11:74675000-74679200	Strong transcription	Hela-S3	cervix
46	chr11:74675000-74692000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr11:74675000-74692200	Strong transcription	Rectal Mucosa Donor 29	rectum
48	chr11:74675200-74691400	Strong transcription	Primary T cells fromperipheralblood	blood
49	chr11:74675200-74691400	Strong transcription	Primary T helper cells fromperipheralblood	blood
50	chr11:74675200-74692200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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