Variant report

Variant	rs12295546
Chromosome Location	chr11:74743894-74743895
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:74742609..74744116-chr11:74752956..74754582,2	K562	blood:
2	chr11:74659227..74660897-chr11:74742251..74744889,2	K562	blood:
3	chr11:74741521..74744619-chr11:74847532..74850514,3	K562	blood:
4	chr11:74742670..74744683-chr11:74780033..74783355,3	K562	blood:

Variant related genes	Relation type
ENSG00000118363	Chromatin interaction
ENSG00000234611	Chromatin interaction
ENSG00000166435	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10160407	0.83[AMR][1000 genomes]
rs10501418	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs10501421	1.00[CHB][hapmap]
rs11236259	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes]
rs11236293	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11501910	0.83[AMR][1000 genomes]
rs12098929	0.83[AMR][1000 genomes]
rs12271960	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12273852	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12274227	0.83[AMR][1000 genomes]
rs12275050	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12278314	0.83[AMR][1000 genomes]
rs12283412	0.83[AMR][1000 genomes]
rs12284331	0.83[AMR][1000 genomes]
rs12286425	0.83[AMR][1000 genomes]
rs12286482	0.83[AMR][1000 genomes]
rs12287287	0.83[AMR][1000 genomes]
rs12288052	0.83[AMR][1000 genomes]
rs12289885	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12290239	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12292428	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13343191	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes]
rs1439677	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17133760	1.00[CHB][hapmap]
rs4133526	0.83[AMR][1000 genomes]
rs7111955	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72992687	1.00[ASN][1000 genomes]
rs72994528	1.00[ASN][1000 genomes]
rs73492743	0.83[AMR][1000 genomes]
rs73492794	0.83[AMR][1000 genomes]
rs73496929	0.83[AMR][1000 genomes]
rs73496931	0.83[AMR][1000 genomes]
rs73498736	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73498737	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7928010	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes]
rs7947726	1.00[CHB][hapmap]
rs9943586	1.00[CEU][hapmap];1.00[CHB][hapmap]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74726600-74746400	Weak transcription	GM12878-XiMat	blood
2	chr11:74739600-74744000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr11:74741800-74748000	Enhancers	Fetal Intestine Large	intestine
4	chr11:74742200-74748600	Enhancers	Fetal Intestine Small	intestine
5	chr11:74742600-74744200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr11:74742800-74745600	Enhancers	K562	blood
7	chr11:74743000-74746600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr11:74743000-74751800	Weak transcription	Right Atrium	heart
9	chr11:74743200-74746400	Weak transcription	Placenta	Placenta
10	chr11:74743200-74746800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr11:74743200-74746800	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr11:74743200-74747000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr11:74743200-74747000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr11:74743200-74747000	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr11:74743200-74747000	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr11:74743200-74747000	Weak transcription	HMEC	breast
17	chr11:74743200-74747200	Weak transcription	Brain Substantia Nigra	brain
18	chr11:74743200-74748800	Weak transcription	Spleen	Spleen
19	chr11:74743400-74744800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr11:74743600-74747000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr11:74743800-74746800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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