Variant report

Variant	rs7947726
Chromosome Location	chr11:74886074-74886075
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:74883211..74885024-chr11:74885552..74887850,2	MCF-7	breast:
2	chr11:74884999..74887214-chr11:74893801..74896060,2	MCF-7	breast:
3	chr11:74885299..74886979-chr11:74899897..74901774,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10501421	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.94[LWK][hapmap];0.86[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12273852	1.00[CHB][hapmap]
rs12289885	1.00[CHB][hapmap]
rs12290239	1.00[CHB][hapmap]
rs12292428	1.00[CHB][hapmap]
rs12295546	1.00[CHB][hapmap]
rs17133760	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs7111955	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054122	chr11:74872792-74895241	Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74864200-74898400	Weak transcription	Esophagus	oesophagus
2	chr11:74870800-74901600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr11:74871400-74886800	Weak transcription	Brain Substantia Nigra	brain
4	chr11:74876200-74906200	Weak transcription	Spleen	Spleen
5	chr11:74880800-74911000	Weak transcription	Gastric	stomach
6	chr11:74881200-74886800	Weak transcription	Adipose Nuclei	Adipose
7	chr11:74881200-74905600	Weak transcription	Pancreas	Pancrea
8	chr11:74881600-74916000	Weak transcription	Small Intestine	intestine
9	chr11:74882200-74886200	Weak transcription	Stomach Mucosa	stomach
10	chr11:74883400-74887200	Genic enhancers	Liver	Liver
11	chr11:74883600-74889800	Strong transcription	Fetal Intestine Small	intestine
12	chr11:74883600-74895000	Weak transcription	Colonic Mucosa	Colon
13	chr11:74884200-74886400	Strong transcription	Fetal Intestine Large	intestine
14	chr11:74884600-74886200	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr11:74884600-74887000	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr11:74884600-74887200	Enhancers	Brain Anterior Caudate	brain
17	chr11:74884800-74887600	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr11:74884800-74894400	Weak transcription	HepG2	liver
19	chr11:74884800-74898200	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr11:74885000-74888000	Enhancers	Fetal Muscle Leg	muscle
21	chr11:74885200-74886200	Enhancers	Monocytes-CD14+_RO01746	blood
22	chr11:74885400-74886200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
23	chr11:74885400-74886400	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr11:74885400-74886400	Enhancers	GM12878-XiMat	blood
25	chr11:74885400-74886600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
26	chr11:74885400-74886600	Enhancers	Brain Inferior Temporal Lobe	brain
27	chr11:74885400-74886600	Enhancers	Stomach Smooth Muscle	stomach
28	chr11:74885400-74887000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr11:74885400-74887000	Enhancers	Primary T cells fromperipheralblood	blood
30	chr11:74885400-74887000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr11:74885400-74887200	Enhancers	Fetal Stomach	stomach
32	chr11:74885400-74887200	Enhancers	Dnd41	blood
33	chr11:74885400-74887400	Enhancers	Primary hematopoietic stem cells short term culture	blood
34	chr11:74885400-74887400	Enhancers	Fetal Muscle Trunk	muscle
35	chr11:74885600-74886400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr11:74885600-74886600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr11:74885600-74886600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
38	chr11:74885600-74886600	Enhancers	Primary T helper cells fromperipheralblood	blood
39	chr11:74885600-74886800	Enhancers	Primary T helper cells PMA-I stimulated	--
40	chr11:74885600-74886800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
41	chr11:74885600-74886800	Enhancers	Colon Smooth Muscle	Colon
42	chr11:74885600-74886800	Enhancers	HSMMtube	muscle
43	chr11:74885600-74887000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr11:74885600-74887200	Enhancers	Left Ventricle	heart
45	chr11:74885600-74887200	Enhancers	Skeletal Muscle Female	skeletal muscle
46	chr11:74885800-74886200	Enhancers	Primary B cells from peripheral blood	blood
47	chr11:74885800-74886400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr11:74885800-74886400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr11:74885800-74886400	Enhancers	Primary neutrophils fromperipheralblood	blood
50	chr11:74885800-74886600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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