Variant report

Variant	rs12292428
Chromosome Location	chr11:74733338-74733339
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:74732707..74737520-chr11:74738671..74743586,5	MCF-7	breast:
2	chr11:74725568..74728361-chr11:74730920..74733863,2	MCF-7	breast:
3	chr11:74731114..74733845-chr11:74735387..74737744,2	K562	blood:
4	chr11:74732304..74734096-chr11:74818351..74820380,2	K562	blood:
5	chr11:74659749..74661462-chr11:74730590..74733403,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166435	Chromatin interaction
ENSG00000118363	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10160407	0.83[AMR][1000 genomes]
rs10501418	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs10501421	1.00[CHB][hapmap]
rs11236259	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes]
rs11236293	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11501910	0.83[AMR][1000 genomes]
rs12098929	0.83[AMR][1000 genomes]
rs12271960	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12273852	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12274227	0.83[AMR][1000 genomes]
rs12275050	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12278314	0.83[AMR][1000 genomes]
rs12283412	0.83[AMR][1000 genomes]
rs12284331	0.83[AMR][1000 genomes]
rs12286425	0.83[AMR][1000 genomes]
rs12286482	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes]
rs12287287	0.83[AMR][1000 genomes]
rs12288052	0.83[AMR][1000 genomes]
rs12289885	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12290239	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12295546	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13343191	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1439677	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17133760	1.00[CHB][hapmap]
rs4133526	0.83[AMR][1000 genomes]
rs57031821	0.83[AMR][1000 genomes]
rs7111955	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72992687	1.00[ASN][1000 genomes]
rs72994528	1.00[ASN][1000 genomes]
rs73492727	0.83[AMR][1000 genomes]
rs73492743	0.83[AMR][1000 genomes]
rs73492794	0.83[AMR][1000 genomes]
rs73496929	0.83[AMR][1000 genomes]
rs73496931	0.83[AMR][1000 genomes]
rs73498736	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73498737	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7928010	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes]
rs7947726	1.00[CHB][hapmap]
rs9943586	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74718000-74733800	Weak transcription	Brain Substantia Nigra	brain
2	chr11:74718000-74734200	Weak transcription	Right Ventricle	heart
3	chr11:74721600-74733400	Weak transcription	Pancreas	Pancrea
4	chr11:74721600-74734200	Weak transcription	Brain Angular Gyrus	brain
5	chr11:74721600-74734200	Weak transcription	Brain Anterior Caudate	brain
6	chr11:74721600-74734200	Weak transcription	Brain Hippocampus Middle	brain
7	chr11:74721600-74734200	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr11:74721600-74734200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr11:74723800-74733800	Weak transcription	Duodenum Mucosa	Duodenum
10	chr11:74724000-74734200	Weak transcription	Brain Cingulate Gyrus	brain
11	chr11:74724600-74735400	Weak transcription	Aorta	Aorta
12	chr11:74725600-74737000	Weak transcription	Thymus	Thymus
13	chr11:74726600-74746400	Weak transcription	GM12878-XiMat	blood
14	chr11:74730600-74734200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr11:74731000-74733400	Weak transcription	Fetal Intestine Large	intestine
16	chr11:74732000-74733800	Weak transcription	Right Atrium	heart
17	chr11:74732000-74734800	Enhancers	Fetal Muscle Leg	muscle
18	chr11:74732000-74737800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr11:74732200-74733800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr11:74732400-74736600	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr11:74732600-74733600	Weak transcription	Fetal Intestine Small	intestine
22	chr11:74732600-74733800	Weak transcription	Fetal Heart	heart
23	chr11:74732600-74733800	Weak transcription	Left Ventricle	heart
24	chr11:74732800-74733800	Weak transcription	Psoas Muscle	Psoas
25	chr11:74732800-74734800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr11:74733200-74736800	Enhancers	Skeletal Muscle Female	skeletal muscle
27	chr11:74733200-74738400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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