Variant report

Variant	rs12286482
Chromosome Location	chr11:74536459-74536460
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10160407	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10501418	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs11236224	1.00[ASN][1000 genomes]
rs11236229	1.00[ASN][1000 genomes]
rs11236239	0.83[AMR][1000 genomes]
rs11236247	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11236249	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11236259	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11236293	0.83[AMR][1000 genomes]
rs11501909	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11501910	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12098929	1.00[AMR][1000 genomes]
rs12270712	1.00[ASN][1000 genomes]
rs12271211	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12271960	0.83[AMR][1000 genomes]
rs12272764	1.00[ASN][1000 genomes]
rs12273852	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes]
rs12274227	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12275050	0.83[AMR][1000 genomes]
rs12275056	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12278314	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12283412	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12283768	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs12284331	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12286425	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12287287	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12288052	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12290239	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs12290339	1.00[CEU][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12292428	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes]
rs12295546	0.83[AMR][1000 genomes]
rs13343191	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes]
rs1439677	0.83[AMR][1000 genomes]
rs28637653	0.85[AMR][1000 genomes]
rs4133526	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56306513	1.00[ASN][1000 genomes]
rs57031821	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59481855	1.00[ASN][1000 genomes]
rs6592593	1.00[ASN][1000 genomes]
rs7109667	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7111955	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes]
rs7125078	1.00[ASN][1000 genomes]
rs7128783	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72991236	1.00[ASN][1000 genomes]
rs72991239	1.00[ASN][1000 genomes]
rs72991244	1.00[ASN][1000 genomes]
rs73490680	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73490691	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73492727	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73492743	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73492794	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73496929	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73496931	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73498736	0.83[AMR][1000 genomes]
rs73498737	0.83[AMR][1000 genomes]
rs7928010	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7947106	1.00[ASN][1000 genomes]
rs9943586	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757451	chr11:73842609-74545888	Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	esv2759837	chr11:73842609-74557597	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
3	esv2758277	chr11:73887567-74557597	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
4	nsv932190	chr11:74359867-74618935	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	41 gene(s)	inside rSNPs	diseases
5	nsv897916	chr11:74465068-74574677	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv897917	chr11:74474266-74595507	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74502800-74545600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr11:74503200-74537800	Weak transcription	Pancreas	Pancrea
3	chr11:74520800-74537800	Weak transcription	Colonic Mucosa	Colon
4	chr11:74528000-74576400	Weak transcription	Stomach Mucosa	stomach
5	chr11:74528800-74537800	Weak transcription	Lung	lung
6	chr11:74529800-74537200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr11:74530400-74537600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr11:74530600-74536800	Weak transcription	Placenta	Placenta
9	chr11:74531600-74542400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr11:74531800-74540800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr11:74532000-74537200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr11:74532000-74538000	Weak transcription	Hela-S3	cervix
13	chr11:74532200-74537000	Weak transcription	Fetal Thymus	thymus
14	chr11:74532200-74537400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr11:74532200-74537800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr11:74532200-74537800	Weak transcription	HMEC	breast
17	chr11:74532600-74541000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr11:74532800-74538200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr11:74533000-74537400	Strong transcription	Liver	Liver
20	chr11:74533000-74539000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
21	chr11:74533000-74540800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
22	chr11:74533000-74543000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr11:74533200-74537200	Weak transcription	Esophagus	oesophagus
24	chr11:74533200-74539800	ZNF genes & repeats	Dnd41	blood
25	chr11:74533400-74536600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr11:74533400-74537200	Weak transcription	Ovary	ovary
27	chr11:74533400-74537600	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr11:74533400-74537800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr11:74533400-74537800	Weak transcription	Spleen	Spleen
30	chr11:74533400-74538800	ZNF genes & repeats	GM12878-XiMat	blood
31	chr11:74533400-74545800	Weak transcription	Left Ventricle	heart
32	chr11:74533600-74537200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr11:74533600-74537600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr11:74533600-74537800	Weak transcription	Gastric	stomach
35	chr11:74533600-74546200	Weak transcription	Aorta	Aorta
36	chr11:74533600-74546200	Weak transcription	Psoas Muscle	Psoas
37	chr11:74533600-74546400	Weak transcription	Right Ventricle	heart
38	chr11:74533800-74536800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr11:74533800-74536800	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr11:74533800-74537800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr11:74533800-74537800	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr11:74533800-74538000	Weak transcription	NH-A	brain
43	chr11:74533800-74545200	Weak transcription	Osteobl	bone
44	chr11:74533800-74553200	Weak transcription	Fetal Heart	heart
45	chr11:74534000-74537800	Weak transcription	Brain Hippocampus Middle	brain
46	chr11:74534000-74537800	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr11:74534000-74538000	Weak transcription	Brain Angular Gyrus	brain
48	chr11:74534000-74538400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
49	chr11:74534000-74538600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
50	chr11:74534000-74538800	ZNF genes & repeats	Primary B cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links