Variant report

Variant	rs9943586
Chromosome Location	chr11:74561248-74561249
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:74552536..74554674-chr11:74560171..74562245,2	K562	blood:
2	chr11:74559768..74561678-chr11:74563525..74565103,2	K562	blood:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10160407	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10501418	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs11236224	1.00[ASN][1000 genomes]
rs11236229	1.00[ASN][1000 genomes]
rs11236247	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11236249	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11236259	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11501909	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11501910	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12098929	0.85[AMR][1000 genomes]
rs12270712	1.00[ASN][1000 genomes]
rs12271211	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12272764	1.00[ASN][1000 genomes]
rs12273852	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs12274227	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12275056	0.91[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12278314	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12283412	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12283768	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs12284331	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12286425	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12286482	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12287287	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12288052	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12290239	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap]
rs12290339	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs12292428	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap]
rs12295546	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs13343191	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes]
rs4133526	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56306513	1.00[ASN][1000 genomes]
rs57031821	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59481855	1.00[ASN][1000 genomes]
rs6592593	1.00[ASN][1000 genomes]
rs7109667	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7111955	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs7125078	1.00[ASN][1000 genomes]
rs7128783	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72991236	1.00[ASN][1000 genomes]
rs72991239	1.00[ASN][1000 genomes]
rs72991244	1.00[ASN][1000 genomes]
rs73490680	0.95[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73490691	1.00[ASN][1000 genomes]
rs73492727	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73492743	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73492794	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73496929	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73496931	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7928010	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7947106	1.00[CHD][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932190	chr11:74359867-74618935	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	41 gene(s)	inside rSNPs	diseases
2	nsv897916	chr11:74465068-74574677	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv897917	chr11:74474266-74595507	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74528000-74576400	Weak transcription	Stomach Mucosa	stomach
2	chr11:74543800-74565800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
3	chr11:74544200-74570800	Strong transcription	Duodenum Mucosa	Duodenum
4	chr11:74545600-74564600	Strong transcription	Fetal Muscle Trunk	muscle
5	chr11:74545600-74568400	Strong transcription	Fetal Intestine Large	intestine
6	chr11:74545800-74565000	Strong transcription	Fetal Muscle Leg	muscle
7	chr11:74546000-74566800	Strong transcription	Fetal Stomach	stomach
8	chr11:74547600-74571400	Weak transcription	Fetal Brain Male	brain
9	chr11:74547800-74562800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr11:74549400-74567600	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr11:74550600-74564600	Strong transcription	Fetal Intestine Small	intestine
12	chr11:74551000-74568400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr11:74552600-74565400	Strong transcription	Rectal Mucosa Donor 29	rectum
14	chr11:74552800-74576800	Strong transcription	Stomach Smooth Muscle	stomach
15	chr11:74553800-74569400	Weak transcription	Fetal Heart	heart
16	chr11:74554200-74567600	Weak transcription	Psoas Muscle	Psoas
17	chr11:74554800-74571600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr11:74555800-74569800	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr11:74556200-74561600	Weak transcription	GM12878-XiMat	blood
20	chr11:74556800-74562000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr11:74556800-74562400	Weak transcription	Hela-S3	cervix
22	chr11:74557200-74561800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr11:74557200-74562800	Weak transcription	K562	blood
24	chr11:74558200-74563400	Strong transcription	Rectal Smooth Muscle	rectum
25	chr11:74558200-74564400	Strong transcription	Thymus	Thymus
26	chr11:74558200-74564600	Strong transcription	Dnd41	blood
27	chr11:74558200-74565200	Strong transcription	Colonic Mucosa	Colon
28	chr11:74558400-74564000	Strong transcription	Fetal Brain Female	brain
29	chr11:74558400-74564200	Strong transcription	Skeletal Muscle Male	skeletal muscle
30	chr11:74558400-74564600	Strong transcription	Brain Inferior Temporal Lobe	brain
31	chr11:74558600-74561400	Weak transcription	Fetal Kidney	kidney
32	chr11:74558600-74561600	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr11:74558600-74563400	Strong transcription	Brain Anterior Caudate	brain
34	chr11:74558600-74563400	Strong transcription	Left Ventricle	heart
35	chr11:74558600-74563600	Strong transcription	Placenta	Placenta
36	chr11:74558600-74565000	Strong transcription	Primary T cells from cord blood	blood
37	chr11:74558600-74565800	Strong transcription	Primary T helper cells PMA-I stimulated	--
38	chr11:74558800-74561600	Weak transcription	Primary B cells from cord blood	blood
39	chr11:74558800-74562000	Weak transcription	Primary monocytes fromperipheralblood	blood
40	chr11:74558800-74562000	Weak transcription	HUVEC	blood vessel
41	chr11:74558800-74564600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr11:74558800-74565400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr11:74558800-74567400	Weak transcription	Small Intestine	intestine
44	chr11:74559000-74561800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
45	chr11:74559000-74562000	Weak transcription	Primary T cells fromperipheralblood	blood
46	chr11:74559000-74562000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr11:74559000-74571400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
48	chr11:74559200-74561800	Weak transcription	Primary B cells from peripheral blood	blood
49	chr11:74559200-74562200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr11:74559200-74562400	Weak transcription	Ovary	ovary

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