Variant report

Variant	rs11501910
Chromosome Location	chr11:74585984-74585985
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10160407	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10501418	0.91[EUR][1000 genomes]
rs11236224	1.00[ASN][1000 genomes]
rs11236229	1.00[ASN][1000 genomes]
rs11236239	0.83[AMR][1000 genomes]
rs11236247	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11236249	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11236259	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11236293	0.83[AMR][1000 genomes]
rs11501909	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12098929	1.00[AMR][1000 genomes]
rs12270712	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12271211	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12271960	0.83[AMR][1000 genomes]
rs12272764	1.00[ASN][1000 genomes]
rs12273852	0.83[AMR][1000 genomes]
rs12274227	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12275050	0.83[AMR][1000 genomes]
rs12275056	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12278314	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12283412	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12283768	1.00[ASN][1000 genomes]
rs12284331	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12286425	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12286482	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12287287	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12288052	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12290339	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12292428	0.83[AMR][1000 genomes]
rs12295546	0.83[AMR][1000 genomes]
rs13343191	1.00[AMR][1000 genomes]
rs1439677	0.83[AMR][1000 genomes]
rs28637653	0.85[AMR][1000 genomes]
rs4133526	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56306513	1.00[ASN][1000 genomes]
rs57031821	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59481855	1.00[ASN][1000 genomes]
rs6592593	1.00[ASN][1000 genomes]
rs7109667	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7111955	0.83[AMR][1000 genomes]
rs7125078	1.00[ASN][1000 genomes]
rs7128783	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72991236	1.00[ASN][1000 genomes]
rs72991239	1.00[ASN][1000 genomes]
rs72991244	1.00[ASN][1000 genomes]
rs73490680	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73490691	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73492727	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73492743	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73492794	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73496929	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73496931	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73498736	0.83[AMR][1000 genomes]
rs73498737	0.83[AMR][1000 genomes]
rs7928010	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7947106	1.00[ASN][1000 genomes]
rs9943586	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932190	chr11:74359867-74618935	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	41 gene(s)	inside rSNPs	diseases
2	nsv897917	chr11:74474266-74595507	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv832210	chr11:74562782-74732133	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74562200-74595800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:74569800-74588400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr11:74570000-74588400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr11:74570600-74588400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
5	chr11:74571000-74588400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
6	chr11:74573600-74588400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr11:74574200-74588400	ZNF genes & repeats	Adipose Nuclei	Adipose
8	chr11:74574800-74586600	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
9	chr11:74575600-74588400	ZNF genes & repeats	Liver	Liver
10	chr11:74576200-74586600	ZNF genes & repeats	Duodenum Mucosa	Duodenum
11	chr11:74579400-74587800	ZNF genes & repeats	Fetal Brain Female	brain
12	chr11:74579400-74588000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr11:74580400-74586600	ZNF genes & repeats	Fetal Intestine Small	intestine
14	chr11:74580600-74586600	Weak transcription	HUVEC	blood vessel
15	chr11:74580600-74588000	ZNF genes & repeats	Left Ventricle	heart
16	chr11:74580600-74588200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr11:74580800-74587800	ZNF genes & repeats	Aorta	Aorta
18	chr11:74581000-74586000	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr11:74581000-74586200	ZNF genes & repeats	Colon Smooth Muscle	Colon
20	chr11:74581000-74586200	ZNF genes & repeats	Stomach Smooth Muscle	stomach
21	chr11:74581000-74588000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
22	chr11:74581000-74588400	ZNF genes & repeats	Fetal Lung	lung
23	chr11:74582800-74587400	Strong transcription	Rectal Smooth Muscle	rectum
24	chr11:74582800-74587800	Weak transcription	K562	blood
25	chr11:74582800-74588200	Weak transcription	NH-A	brain
26	chr11:74583000-74588400	Strong transcription	Muscle Satellite Cultured Cells	--
27	chr11:74583200-74587400	Weak transcription	NHDF-Ad	bronchial
28	chr11:74583200-74587800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr11:74583200-74587800	Weak transcription	HMEC	breast
30	chr11:74583200-74594600	Weak transcription	Hela-S3	cervix
31	chr11:74583200-74595200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr11:74583400-74586200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr11:74583400-74588400	Strong transcription	Primary T cells fromperipheralblood	blood
34	chr11:74583600-74586800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr11:74583600-74588000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr11:74583600-74588200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr11:74583600-74588400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr11:74583800-74587000	Strong transcription	Rectal Mucosa Donor 29	rectum
39	chr11:74583800-74587600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr11:74583800-74588200	Strong transcription	Brain Angular Gyrus	brain
41	chr11:74583800-74588200	Strong transcription	Brain Anterior Caudate	brain
42	chr11:74583800-74588200	Strong transcription	Skeletal Muscle Female	skeletal muscle
43	chr11:74583800-74595200	Weak transcription	Fetal Thymus	thymus
44	chr11:74583800-74598600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr11:74584000-74586000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr11:74584000-74587600	Weak transcription	Psoas Muscle	Psoas
47	chr11:74584000-74587800	Weak transcription	HepG2	liver
48	chr11:74584000-74588000	Strong transcription	Primary T helper cells fromperipheralblood	blood
49	chr11:74584000-74588400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr11:74584000-74594400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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