Variant report

Variant	rs13343191
Chromosome Location	chr11:74670129-74670130
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:74665039..74667224-chr11:74668149..74670219,3	MCF-7	breast:
2	chr11:74667515..74671064-chr11:74674801..74677690,4	K562	blood:
3	chr11:74665537..74669916-chr11:74669929..74673689,6	K562	blood:
4	chr11:74669969..74672134-chr11:74806047..74808621,2	K562	blood:
5	chr11:74668433..74670131-chr11:74694358..74696257,2	MCF-7	breast:
6	chr11:74662428..74664987-chr11:74667630..74670235,3	K562	blood:
7	chr11:74665174..74667770-chr11:74669572..74672146,3	MCF-7	breast:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10160407	1.00[AMR][1000 genomes]
rs10501418	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs11236239	0.83[AMR][1000 genomes]
rs11236247	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes]
rs11236249	1.00[AMR][1000 genomes]
rs11236259	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes]
rs11236293	0.83[AMR][1000 genomes]
rs11501910	1.00[AMR][1000 genomes]
rs12098929	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12271211	0.83[AMR][1000 genomes]
rs12271960	0.83[AMR][1000 genomes]
rs12273852	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12274227	1.00[AMR][1000 genomes]
rs12275050	0.83[AMR][1000 genomes]
rs12275056	0.83[AMR][1000 genomes]
rs12278314	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs12283412	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs12284331	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12286425	1.00[AMR][1000 genomes]
rs12286482	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes]
rs12287287	1.00[AMR][1000 genomes]
rs12288052	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes]
rs12289885	1.00[CHB][hapmap]
rs12290239	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap]
rs12290339	0.83[AMR][1000 genomes]
rs12292428	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12295546	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes]
rs1439677	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs28637653	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4133526	1.00[AMR][1000 genomes]
rs57031821	1.00[AMR][1000 genomes]
rs7109667	0.83[AMR][1000 genomes]
rs7111955	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7128783	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73490680	0.83[AMR][1000 genomes]
rs73490691	0.83[AMR][1000 genomes]
rs73492727	1.00[AMR][1000 genomes]
rs73492743	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73492794	1.00[AMR][1000 genomes]
rs73496929	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73496931	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73498736	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73498737	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7928010	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs9943586	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832210	chr11:74562782-74732133	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74661200-74688600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:74661600-74686000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr11:74661800-74672600	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr11:74661800-74675000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr11:74661800-74699200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr11:74661800-74699400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr11:74662000-74677600	Weak transcription	HSMMtube	muscle
8	chr11:74662000-74680800	Weak transcription	Fetal Kidney	kidney
9	chr11:74662000-74682200	Weak transcription	Aorta	Aorta
10	chr11:74662000-74682800	Weak transcription	Colonic Mucosa	Colon
11	chr11:74662200-74671000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr11:74662200-74671600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr11:74662200-74672800	Weak transcription	Gastric	stomach
14	chr11:74662200-74672800	Weak transcription	Stomach Mucosa	stomach
15	chr11:74662200-74677000	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr11:74662200-74677200	Weak transcription	Fetal Muscle Leg	muscle
17	chr11:74662200-74677200	Weak transcription	Thymus	Thymus
18	chr11:74662200-74677800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr11:74662200-74677800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr11:74662200-74699600	Weak transcription	Esophagus	oesophagus
21	chr11:74662400-74670800	Weak transcription	HUVEC	blood vessel
22	chr11:74662400-74671000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr11:74662400-74673000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr11:74662400-74675200	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr11:74662400-74677800	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr11:74662400-74677800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr11:74662400-74677800	Weak transcription	Fetal Stomach	stomach
28	chr11:74662400-74680600	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr11:74662400-74691400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr11:74662600-74670400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr11:74662600-74676600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr11:74662600-74682800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr11:74662600-74686000	Weak transcription	Fetal Brain Male	brain
34	chr11:74662800-74670400	Weak transcription	Spleen	Spleen
35	chr11:74662800-74677800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr11:74662800-74682200	Weak transcription	Lung	lung
37	chr11:74663000-74671000	Strong transcription	Monocytes-CD14+_RO01746	blood
38	chr11:74663200-74680000	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr11:74663600-74671800	Weak transcription	Fetal Brain Female	brain
40	chr11:74664000-74671000	Strong transcription	NHEK	skin
41	chr11:74664000-74680400	Weak transcription	HMEC	breast
42	chr11:74664200-74671600	Weak transcription	NH-A	brain
43	chr11:74664200-74677200	Weak transcription	Fetal Lung	lung
44	chr11:74664400-74675800	Weak transcription	Fetal Muscle Trunk	muscle
45	chr11:74664400-74678000	Weak transcription	Brain Germinal Matrix	brain
46	chr11:74664600-74670800	Strong transcription	Primary T cells fromperipheralblood	blood
47	chr11:74664600-74675800	Weak transcription	Fetal Intestine Large	intestine
48	chr11:74664600-74677800	Weak transcription	NHLF	lung
49	chr11:74665200-74672200	Weak transcription	HUES48 Cell Line	embryonic stem cell
50	chr11:74665600-74671000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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