Variant report

Variant	rs7111955
Chromosome Location	chr11:74722153-74722154
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:74721191..74723681-chr11:74738693..74740282,2	K562	blood:
2	chr11:74720465..74722303-chr11:74950912..74953761,2	K562	blood:
3	chr11:74720689..74723993-chr11:74726887..74730730,4	K562	blood:
4	chr11:74718195..74720247-chr11:74720638..74725199,4	K562	blood:
5	chr11:74663493..74665057-chr11:74721622..74724251,2	K562	blood:
6	chr11:74720292..74723058-chr11:74725364..74728769,4	K562	blood:
7	chr11:74720213..74722321-chr11:74770764..74773550,2	K562	blood:
8	chr11:74709502..74714442-chr11:74716351..74722182,6	K562	blood:

No data

Variant related genes	Relation type
ENSG00000261594	Chromatin interaction
ENSG00000255136	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10160407	0.83[AMR][1000 genomes]
rs10501418	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs10501421	1.00[CHB][hapmap]
rs11236247	1.00[AMR][1000 genomes]
rs11236249	0.83[AMR][1000 genomes]
rs11236259	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes]
rs11236293	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11501910	0.83[AMR][1000 genomes]
rs12098929	0.83[AMR][1000 genomes]
rs12271960	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12273852	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12274227	0.83[AMR][1000 genomes]
rs12275050	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12278314	0.83[AMR][1000 genomes]
rs12283412	0.83[AMR][1000 genomes]
rs12284331	0.83[AMR][1000 genomes]
rs12286425	0.83[AMR][1000 genomes]
rs12286482	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes]
rs12287287	0.83[AMR][1000 genomes]
rs12288052	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes]
rs12289885	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12290239	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12292428	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12295546	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13343191	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1439677	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17133760	1.00[CHB][hapmap]
rs4133526	0.83[AMR][1000 genomes]
rs57031821	0.83[AMR][1000 genomes]
rs72992687	1.00[ASN][1000 genomes]
rs72994528	1.00[ASN][1000 genomes]
rs73492727	0.83[AMR][1000 genomes]
rs73492743	0.83[AMR][1000 genomes]
rs73492794	0.83[AMR][1000 genomes]
rs73496929	0.83[AMR][1000 genomes]
rs73496931	0.83[AMR][1000 genomes]
rs73498736	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73498737	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7928010	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes]
rs7947726	1.00[CHB][hapmap]
rs9943586	1.00[CEU][hapmap];1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832210	chr11:74562782-74732133	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74700400-74723000	Weak transcription	Small Intestine	intestine
2	chr11:74700600-74722600	Weak transcription	HSMM	muscle
3	chr11:74700600-74725000	Weak transcription	HSMMtube	muscle
4	chr11:74701000-74722600	Weak transcription	HUVEC	blood vessel
5	chr11:74701000-74723800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr11:74702400-74722800	Weak transcription	Stomach Mucosa	stomach
7	chr11:74712000-74728200	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr11:74714200-74725400	Strong transcription	Dnd41	blood
9	chr11:74714800-74725000	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr11:74715000-74723600	Strong transcription	HUES48 Cell Line	embryonic stem cell
11	chr11:74715000-74724000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr11:74715400-74723600	Strong transcription	Primary T helper cells PMA-I stimulated	--
13	chr11:74715400-74723800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr11:74715600-74723600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr11:74715600-74725400	Strong transcription	Liver	Liver
16	chr11:74716200-74722200	Strong transcription	K562	blood
17	chr11:74716200-74724000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr11:74716200-74724000	Strong transcription	GM12878-XiMat	blood
19	chr11:74716200-74725600	Strong transcription	Primary T cells from cord blood	blood
20	chr11:74716400-74722800	Strong transcription	Fetal Muscle Leg	muscle
21	chr11:74716400-74723600	Strong transcription	Primary neutrophils fromperipheralblood	blood
22	chr11:74716400-74723800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
23	chr11:74716400-74724000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr11:74716400-74724200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
25	chr11:74716400-74725600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr11:74716400-74725600	Strong transcription	Thymus	Thymus
27	chr11:74716600-74723400	Strong transcription	Primary T helper cells fromperipheralblood	blood
28	chr11:74717200-74722200	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr11:74717400-74724400	Strong transcription	Fetal Thymus	thymus
30	chr11:74717600-74725400	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr11:74717600-74726000	Weak transcription	Esophagus	oesophagus
32	chr11:74717800-74722400	Weak transcription	A549	lung
33	chr11:74718000-74722400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr11:74718000-74723200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr11:74718000-74723800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr11:74718000-74724000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr11:74718000-74724400	Weak transcription	Colon Smooth Muscle	Colon
38	chr11:74718000-74733800	Weak transcription	Brain Substantia Nigra	brain
39	chr11:74718000-74734200	Weak transcription	Right Ventricle	heart
40	chr11:74718200-74722800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr11:74718200-74726200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr11:74718200-74726200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr11:74718200-74729200	Weak transcription	Gastric	stomach
44	chr11:74718400-74723000	Weak transcription	Brain Cingulate Gyrus	brain
45	chr11:74718400-74723400	Weak transcription	Ovary	ovary
46	chr11:74718400-74726200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr11:74718400-74729800	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr11:74718600-74723400	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr11:74718600-74724000	Weak transcription	NHDF-Ad	bronchial
50	chr11:74718600-74725800	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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