Variant report

Variant	rs59968156
Chromosome Location	chr6:102213780-102213781
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs55909656	1.00[EUR][1000 genomes]
rs56354431	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59522262	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59749324	1.00[EUR][1000 genomes]
rs60269247	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60715546	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6919217	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6924351	1.00[EUR][1000 genomes]
rs6940246	1.00[EUR][1000 genomes]
rs73761414	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73761418	1.00[EUR][1000 genomes]
rs73761420	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73761422	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73761424	1.00[EUR][1000 genomes]
rs73761427	1.00[EUR][1000 genomes]
rs73761430	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7767575	1.00[EUR][1000 genomes]
rs7772568	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3384771	chr6:101996253-102283808	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1032499	chr6:102069885-102720998	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1819438	chr6:102211675-102279200	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:102207400-102217800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr6:102209200-102214400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr6:102209200-102217000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:102209400-102214400	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr6:102210800-102214000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:102212200-102215200	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr6:102212600-102214400	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr6:102212800-102213800	Enhancers	H9 Cell Line	embryonic stem cell
9	chr6:102212800-102215000	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr6:102212800-102215800	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr6:102213000-102215200	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr6:102213000-102215400	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr6:102213000-102215400	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr6:102213000-102216200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr6:102213400-102217400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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