Variant report

Variant	rs73761424
Chromosome Location	chr6:102218246-102218247
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs55909656	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56354431	1.00[EUR][1000 genomes]
rs59522262	1.00[EUR][1000 genomes]
rs59749324	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59968156	1.00[EUR][1000 genomes]
rs60269247	1.00[EUR][1000 genomes]
rs60715546	1.00[EUR][1000 genomes]
rs61363307	0.87[AFR][1000 genomes]
rs6919217	1.00[EUR][1000 genomes]
rs6924351	1.00[EUR][1000 genomes]
rs6940246	1.00[EUR][1000 genomes]
rs73761414	1.00[EUR][1000 genomes]
rs73761418	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73761420	1.00[EUR][1000 genomes]
rs73761422	1.00[EUR][1000 genomes]
rs73761427	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73761430	1.00[EUR][1000 genomes]
rs7767575	1.00[EUR][1000 genomes]
rs7772568	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3384771	chr6:101996253-102283808	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1032499	chr6:102069885-102720998	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1819438	chr6:102211675-102279200	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:102214800-102224800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:102217000-102218400	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr6:102217000-102218600	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr6:102217600-102218400	Enhancers	H1 Cell Line	embryonic stem cell
5	chr6:102217600-102218400	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr6:102217600-102224600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr6:102217800-102218600	Active TSS	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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