Variant report

Variant	rs73761422
Chromosome Location	chr6:102216911-102216912
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs55909656	1.00[EUR][1000 genomes]
rs56354431	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59522262	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59749324	1.00[EUR][1000 genomes]
rs59968156	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60269247	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60715546	1.00[EUR][1000 genomes]
rs6919217	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6924351	1.00[EUR][1000 genomes]
rs6940246	1.00[EUR][1000 genomes]
rs73761414	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73761418	1.00[EUR][1000 genomes]
rs73761420	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73761424	1.00[EUR][1000 genomes]
rs73761427	1.00[EUR][1000 genomes]
rs73761430	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7767575	1.00[EUR][1000 genomes]
rs7772568	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3384771	chr6:101996253-102283808	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1032499	chr6:102069885-102720998	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1819438	chr6:102211675-102279200	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:102207400-102217800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr6:102209200-102217000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:102213400-102217400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:102214800-102224800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr6:102215000-102217600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr6:102215200-102217000	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr6:102215200-102217000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr6:102215200-102217600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr6:102215200-102217600	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr6:102215400-102217000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr6:102215400-102217600	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr6:102215800-102217600	Weak transcription	HUES64 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links