Variant report

Variant	rs73761414
Chromosome Location	chr6:102210573-102210574
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs55909656	1.00[EUR][1000 genomes]
rs56354431	1.00[EUR][1000 genomes]
rs59522262	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59749324	1.00[EUR][1000 genomes]
rs59968156	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60269247	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60715546	1.00[EUR][1000 genomes]
rs6919217	1.00[EUR][1000 genomes]
rs6924351	1.00[EUR][1000 genomes]
rs6940246	1.00[EUR][1000 genomes]
rs73761418	1.00[EUR][1000 genomes]
rs73761420	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73761422	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73761424	1.00[EUR][1000 genomes]
rs73761427	1.00[EUR][1000 genomes]
rs73761430	1.00[EUR][1000 genomes]
rs7767575	1.00[EUR][1000 genomes]
rs7772568	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3384771	chr6:101996253-102283808	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1032499	chr6:102069885-102720998	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:102207400-102210800	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr6:102207400-102217800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr6:102207600-102210800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr6:102207600-102212200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr6:102207600-102212800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr6:102208600-102211800	Enhancers	Liver	Liver
7	chr6:102208800-102211000	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr6:102209200-102213000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr6:102209200-102214400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr6:102209200-102217000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:102209400-102210600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:102209400-102210600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr6:102209400-102210600	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr6:102209400-102210600	Weak transcription	HMEC	breast
15	chr6:102209400-102210800	Weak transcription	Fetal Heart	heart
16	chr6:102209400-102214400	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr6:102209800-102210600	Enhancers	Monocytes-CD14+_RO01746	blood
18	chr6:102209800-102211400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr6:102210000-102210600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr6:102210200-102211000	Weak transcription	Adipose Nuclei	Adipose
21	chr6:102210200-102211200	Enhancers	NHEK	skin
22	chr6:102210200-102211400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr6:102210400-102211200	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr6:102210400-102211400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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