Variant report
| Variant | rs6924351 |
|---|---|
| Chromosome Location | chr6:102233463-102233464 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs11960953 | 1.00[MEX][hapmap] |
| rs17062373 | 1.00[MEX][hapmap] |
| rs17062377 | 1.00[MEX][hapmap] |
| rs55909656 | 1.00[EUR][1000 genomes] |
| rs56354431 | 1.00[EUR][1000 genomes] |
| rs59522262 | 1.00[EUR][1000 genomes] |
| rs59749324 | 1.00[EUR][1000 genomes] |
| rs59968156 | 1.00[EUR][1000 genomes] |
| rs60269247 | 1.00[EUR][1000 genomes] |
| rs60715546 | 1.00[EUR][1000 genomes] |
| rs6904491 | 1.00[YRI][hapmap];0.88[AFR][1000 genomes] |
| rs6915277 | 0.87[ASW][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes] |
| rs6919217 | 1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes] |
| rs6919292 | 0.88[AFR][1000 genomes] |
| rs6925630 | 0.86[AFR][1000 genomes] |
| rs6937553 | 0.87[ASW][hapmap];0.84[LWK][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes] |
| rs6940246 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73761414 | 1.00[EUR][1000 genomes] |
| rs73761418 | 1.00[EUR][1000 genomes] |
| rs73761420 | 1.00[EUR][1000 genomes] |
| rs73761422 | 1.00[EUR][1000 genomes] |
| rs73761424 | 1.00[EUR][1000 genomes] |
| rs73761427 | 1.00[EUR][1000 genomes] |
| rs73761430 | 1.00[EUR][1000 genomes] |
| rs7759454 | 1.00[YRI][hapmap] |
| rs7767575 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7772568 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3384771 | chr6:101996253-102283808 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv1032499 | chr6:102069885-102720998 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | esv1819438 | chr6:102211675-102279200 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:102227600-102236000 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
