Variant report

Variant	rs60239886
Chromosome Location	chr14:71984904-71984905
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:71978122..71979911-chr14:71984084..71985808,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs55647033	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55843519	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55893880	1.00[AMR][1000 genomes]
rs56135446	1.00[AMR][1000 genomes]
rs56335120	1.00[AMR][1000 genomes]
rs56861516	1.00[AMR][1000 genomes]
rs57476769	1.00[AMR][1000 genomes]
rs58376035	1.00[AMR][1000 genomes]
rs58529740	1.00[AMR][1000 genomes]
rs59405734	1.00[AMR][1000 genomes]
rs60600157	1.00[AMR][1000 genomes]
rs74060369	1.00[AMR][1000 genomes]
rs74060373	1.00[AMR][1000 genomes]
rs74060376	1.00[AMR][1000 genomes]
rs74060385	1.00[AMR][1000 genomes]
rs74060386	1.00[AMR][1000 genomes]
rs74060387	1.00[AMR][1000 genomes]
rs74060390	1.00[AMR][1000 genomes]
rs74060391	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498021	chr14:71874708-72128721	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv3398985	chr14:71927884-72404676	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71946000-71995600	Weak transcription	Primary T helper cells PMA-I stimulated	--
2	chr14:71965200-71988000	Weak transcription	HSMM	muscle
3	chr14:71966200-71996400	Weak transcription	NHEK	skin
4	chr14:71972600-72006400	Weak transcription	Fetal Thymus	thymus
5	chr14:71974400-71997400	Weak transcription	Brain Substantia Nigra	brain
6	chr14:71974800-71985400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr14:71975800-71988200	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr14:71976400-71988200	Weak transcription	NH-A	brain
9	chr14:71976800-71995600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr14:71976800-72008400	Weak transcription	Thymus	Thymus
11	chr14:71977200-71988200	Weak transcription	Fetal Intestine Small	intestine
12	chr14:71977600-71995600	Weak transcription	Fetal Stomach	stomach
13	chr14:71978000-71988000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr14:71978000-71999400	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr14:71978000-72002800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr14:71978200-71985800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr14:71978200-72000000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr14:71978400-72002600	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr14:71978400-72009400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr14:71978400-72014800	Weak transcription	HMEC	breast
21	chr14:71979000-71987600	Weak transcription	Pancreas	Pancrea
22	chr14:71979000-71998400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr14:71979200-71995600	Weak transcription	Gastric	stomach
24	chr14:71980000-71995600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr14:71980000-71996400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr14:71980000-71996400	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr14:71980000-72021200	Weak transcription	Hela-S3	cervix
28	chr14:71980400-71985400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr14:71980400-71988000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr14:71980400-71988200	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr14:71980600-71996200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr14:71980800-71988000	Weak transcription	Fetal Intestine Large	intestine
33	chr14:71981000-71985400	Weak transcription	Rectal Smooth Muscle	rectum
34	chr14:71981200-71988200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr14:71981200-71995600	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr14:71981200-71996600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr14:71981200-72002200	Weak transcription	Primary T cells fromperipheralblood	blood
38	chr14:71981400-71985200	Weak transcription	Dnd41	blood
39	chr14:71981400-71985800	Weak transcription	Primary B cells from cord blood	blood
40	chr14:71981400-71988200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr14:71981400-71995600	Weak transcription	Esophagus	oesophagus
42	chr14:71981400-71995600	Weak transcription	Spleen	Spleen
43	chr14:71981400-71996000	Weak transcription	Primary T helper cells fromperipheralblood	blood
44	chr14:71981400-71996400	Weak transcription	Ovary	ovary
45	chr14:71981400-71996800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr14:71981400-71997000	Weak transcription	Aorta	Aorta
47	chr14:71981400-71999200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr14:71981400-72003200	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr14:71981400-72021400	Weak transcription	Duodenum Mucosa	Duodenum
50	chr14:71981600-71990200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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